Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNSOP_RS09410 Genome accession   NZ_CP182878
Coordinates   1831405..1832754 (-) Length   449 a.a.
NCBI ID   WP_417895783.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-3132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826405..1837754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOP_RS09390 (ACNSOP_09390) murJ 1827427..1828749 (-) 1323 WP_417895786.1 murein biosynthesis integral membrane protein MurJ -
  ACNSOP_RS09395 (ACNSOP_09395) - 1828746..1830317 (-) 1572 WP_417895785.1 endonuclease/exonuclease/phosphatase family protein -
  ACNSOP_RS09400 (ACNSOP_09400) - 1830508..1830912 (+) 405 WP_026804260.1 Fur family transcriptional regulator -
  ACNSOP_RS09405 (ACNSOP_09405) ybeY 1830930..1831349 (-) 420 WP_417895784.1 rRNA maturation RNase YbeY -
  ACNSOP_RS09410 (ACNSOP_09410) radA 1831405..1832754 (-) 1350 WP_417895783.1 DNA repair protein RadA Machinery gene
  ACNSOP_RS09415 (ACNSOP_09415) - 1832871..1833431 (+) 561 WP_026804263.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACNSOP_RS09420 (ACNSOP_09420) - 1833494..1834408 (+) 915 WP_026804264.1 cytochrome-c peroxidase -
  ACNSOP_RS09425 (ACNSOP_09425) - 1834392..1836098 (+) 1707 WP_417895782.1 diguanylate cyclase domain-containing protein -
  ACNSOP_RS09430 (ACNSOP_09430) - 1836107..1836973 (-) 867 WP_417895781.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49428.98 Da        Isoelectric Point: 6.1942

>NTDB_id=1103179 ACNSOP_RS09410 WP_417895783.1 1831405..1832754(-) (radA) [Aliarcobacter lanthieri strain BNI-3132]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEILKQSIKVSSSTSKAKPITEISQDDITRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLEANSENLFLLSEIKLEEILD
ELLRIDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKNKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKEVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1103179 ACNSOP_RS09410 WP_417895783.1 1831405..1832754(-) (radA) [Aliarcobacter lanthieri strain BNI-3132]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAACACTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAGCAAGAAATTCTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTCACAAGATGATATTACAAGATTTTCATCTTTCAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGGATAGTTCCCGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
GTTGAAAGTTGCAGGAAGCATTGCAAATAGTGGTAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGAAGCAAATAGTGAAAATCTATTTTTATTAAGCGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTCAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAAGATGGAAGTATTGCAGGACCTAGAGTTTTAGAACATATGGTTGATACAGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAGAATAGATTTGGAAGTACAAGTGAAATTGGTATTTTTGA
AATGACATCAGAAGGCTTAATAAGTGCAAAAGATATCGCTTCAAAATTTTTTGATAAAAATAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAAGGAAGTCGTGCGATAATACTGGAAGTTCAAGCATTAGTTTGTGAAACAACATTTCCAAAT
CCAAAAAGAAGTGCAACAGGATTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAAAAAAAATTGGATTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGGCCAATTTCAAAAGAATCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGAAGTTTATTCTATTGATTTAAGACTAAAAGAGGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATCAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTCTCAAAGATGATTGAACTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Streptococcus mitis SK321

47.357

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

95.768

0.474
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment