Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNSOP_RS08045 Genome accession   NZ_CP182878
Coordinates   1573495..1575336 (-) Length   613 a.a.
NCBI ID   WP_417895536.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-3132     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568495..1580336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOP_RS08030 (ACNSOP_08030) - 1568929..1570056 (+) 1128 WP_417895533.1 iron-containing alcohol dehydrogenase -
  ACNSOP_RS08035 (ACNSOP_08035) - 1570075..1572360 (-) 2286 WP_417895534.1 methyl-accepting chemotaxis protein -
  ACNSOP_RS08040 (ACNSOP_08040) - 1572470..1573492 (-) 1023 WP_417895535.1 alanine racemase -
  ACNSOP_RS08045 (ACNSOP_08045) uvrC 1573495..1575336 (-) 1842 WP_417895536.1 excinuclease ABC subunit UvrC Machinery gene
  ACNSOP_RS08050 (ACNSOP_08050) - 1575444..1577867 (+) 2424 WP_418187267.1 methyl-accepting chemotaxis protein -
  ACNSOP_RS08055 (ACNSOP_08055) - 1578423..1578875 (+) 453 Protein_1553 hypothetical protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 72093.26 Da        Isoelectric Point: 8.3408

>NTDB_id=1103178 ACNSOP_RS08045 WP_417895536.1 1573495..1575336(-) (uvrC) [Aliarcobacter lanthieri strain BNI-3132]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMICEVENLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKSC
IKGKNACLFYQIERCLAPCENKISKEDYSKIVENALEYIYNKTKLISKLKEKMKIYSDDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFAINSNNKKAVIVRMFLRDGKLTSSNYDFIKINDDLEFDYEEAYKRAIINYYDNELPLLPKEILIA
HEFLELDDIEEFLYTKFNKKIKIVNPKKDKKREIINIALNNCNELIRLEEAKNQTTIYEELKELFTLKTLPYLIESFDNS
HLMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKDSNGEFKNFNLLTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLYFGEFDKIKNASFEELKSVLNEKDANTILDYFNDFKD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1103178 ACNSOP_RS08045 WP_417895536.1 1573495..1575336(-) (uvrC) [Aliarcobacter lanthieri strain BNI-3132]
ATGATTTTAGAAGAGAAATTAAAAGAGTTACCAAATGATGCTGGAGTTTATCAATACTTTGATAAAGAAGGACATCTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTTAAATTTACTCCAAAACTATTACCAGCAGATA
AACTAAGCCCTCGTATTTATAAAATGATTTGTGAAGTTGAAAATTTGGAATGGATAGTTGTACCAAATGAACATGATGCA
CTTATATTAGAAAATTCTTTAATAAAACAATTAAAACCAAAATACAATATCTTACTTCGTGATGATAAAACATATCCATA
TATTTTCATAGATTATAATGATGATTTTCCAAGGTTAGAAATAACAAGAAAAATACAAAAAGGAAAAAATATAAAATATT
TTGGTCCTTATTCAAGTGGAGCAAGAGATATGCTTGATAGTATCTATGAAATAGTTCCTTTAGTACAAAAGAAATCATGT
ATCAAAGGGAAAAATGCATGTTTATTTTATCAAATAGAAAGATGTTTAGCTCCTTGTGAGAATAAAATTTCAAAGGAAGA
TTATTCAAAAATAGTTGAAAATGCTTTAGAATATATCTACAATAAAACTAAACTTATTTCTAAATTAAAAGAAAAAATGA
AAATTTATTCTGATGATTTTCGTTTTGAAGATGCTATGAACTTAAGAGATAGAATAAAAACCATTGAGAAATCTCAAATA
AAAACTGGAATAGACCTCGCTACAAATGAAGATATTGATATTTTTGCAATAAACTCAAATAATAAAAAAGCTGTGATTGT
AAGAATGTTTTTAAGAGATGGAAAACTTACATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAATTTGATT
ATGAAGAAGCATATAAAAGAGCTATTATAAACTACTATGATAACGAACTTCCACTTTTACCAAAAGAGATTTTAATAGCA
CATGAGTTTTTAGAATTAGATGATATTGAAGAATTTTTATATACAAAATTTAATAAAAAAATAAAAATAGTAAATCCTAA
AAAAGATAAAAAAAGAGAGATTATAAATATTGCACTAAATAACTGTAATGAACTTATAAGACTAGAAGAAGCAAAAAATC
AAACAACAATTTATGAAGAGTTAAAAGAGCTATTTACTCTTAAAACTTTACCATATCTTATTGAAAGCTTTGATAATTCT
CATCTTATGGGACAAGCAACAGTTGGTGCAATGATTGTTTGGAATGAAGAGTTAAATTCTTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCAAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGAGTTGAAAGTTTTGAAAAAA
ATCCAGCACCAGATTTATGGATAATTGATGGAGGTGAAACTTTACTAAAATTAGCTTATGATATAGTTCAAAGTGTTGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAAAAAATAGATGCAAAAGCACATAGAGCAAAAGGAAGTGCAAAAGATAT
AATTCACTATAAAGATTCAAATGGTGAATTTAAAAATTTTAATTTACTTACCAGTGATAAAAGACTACAATTCGTTCAAA
GACAAAGAGATGAAGCACACAGATTTGTAATAAATTTCCATAAGAAACAAAAAAGAACTCAAGATAAACAGATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAGATTAAGAAACTTCTTTTATATTTTGGAGAATTTGATAAGATAAAAAATGC
TTCTTTTGAAGAGTTAAAAAGTGTATTAAATGAAAAAGATGCAAATACAATTTTAGATTATTTTAATGATTTCAAGGATT
AA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.421

97.716

0.512

Multiple sequence alignment