Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNSOK_RS10315 Genome accession   NZ_CP182877
Coordinates   2052596..2053945 (+) Length   449 a.a.
NCBI ID   WP_113872023.1    Uniprot ID   A0A366MLW1
Organism   Aliarcobacter lanthieri strain BNI-4365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047596..2058945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOK_RS10290 (ACNSOK_10290) - 2048378..2049244 (+) 867 WP_113872027.1 hypothetical protein -
  ACNSOK_RS10295 (ACNSOK_10295) - 2049253..2050959 (-) 1707 WP_113872026.1 diguanylate cyclase domain-containing protein -
  ACNSOK_RS10300 (ACNSOK_10300) - 2050943..2051167 (-) 225 WP_418186669.1 hypothetical protein -
  ACNSOK_RS10305 (ACNSOK_10305) - 2051192..2051854 (-) 663 WP_418186670.1 cytochrome-c peroxidase -
  ACNSOK_RS10310 (ACNSOK_10310) - 2051919..2052479 (-) 561 WP_113872024.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACNSOK_RS10315 (ACNSOK_10315) radA 2052596..2053945 (+) 1350 WP_113872023.1 DNA repair protein RadA Machinery gene
  ACNSOK_RS10320 (ACNSOK_10320) ybeY 2054001..2054420 (+) 420 WP_113872022.1 rRNA maturation RNase YbeY -
  ACNSOK_RS10325 (ACNSOK_10325) - 2054438..2054842 (-) 405 WP_113872021.1 Fur family transcriptional regulator -
  ACNSOK_RS10330 (ACNSOK_10330) - 2055033..2056604 (+) 1572 WP_113872020.1 endonuclease/exonuclease/phosphatase family protein -
  ACNSOK_RS10335 (ACNSOK_10335) murJ 2056601..2057923 (+) 1323 WP_113872019.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49356.96 Da        Isoelectric Point: 6.8495

>NTDB_id=1103170 ACNSOK_RS10315 WP_113872023.1 2052596..2053945(+) (radA) [Aliarcobacter lanthieri strain BNI-4365]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKQSIKVSSSTSKAKPITEILQDDVTRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLDANSKNLFLLSEIKLEEILD
ELLRVDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1103170 ACNSOK_RS10315 WP_113872023.1 2052596..2053945(+) (radA) [Aliarcobacter lanthieri strain BNI-4365]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAGCACTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAACAAGAAGTTTTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTTACAAGATGATGTTACAAGATTTTCATCTTTTAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGAATAGTTCCTGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
ATTAAAAGTTGCAGGAAGCATTGCAAATAGTGGGAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGATGCAAATAGTAAAAATCTATTTTTATTAAGTGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGGGTTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTCAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAGGATGGAAGTATTGCAGGTCCTAGAGTTTTAGAACATATGGTTGATACCGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAGAACAGATTTGGAAGTACAAGCGAAATTGGTATTTTTGA
AATGACATCAGAAGGATTAATAAGTGCAAAAGATATAGCTTCAAAATTTTTTGACAAAAGCAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAGGGGAGTCGTGCAATAATACTTGAAGTTCAAGCACTTGTTTGTGAGACAACATTCCCAAAT
CCAAAAAGAAGTGCAACAGGGTTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGACCAATCTCAAAAGAGTCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGATGTTTACTCTATTGATTTAAGACTAAAAGAAGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATAAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTATCAAAGATGATTGAACTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366MLW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Streptococcus mitis SK321

47.357

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

95.768

0.474
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment