Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK31_RS01680 Genome accession   NZ_AP031581
Coordinates   359786..360604 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JUNP496     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354786..365604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK31_RS01645 - 355368..355498 (-) 131 Protein_315 hypothetical protein -
  ACAK31_RS01650 (JUNP496_0334) rpoZ 355537..355815 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK31_RS01655 (JUNP496_0335) gmk 355888..356517 (-) 630 WP_000015937.1 guanylate kinase -
  ACAK31_RS01660 (JUNP496_0336) ispH 356640..357590 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK31_RS01665 (JUNP496_0337) fimU 357760..358233 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK31_RS01670 (JUNP496_0338) pilV 358227..358787 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACAK31_RS01675 (JUNP496_0339) pilW 358788..359789 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACAK31_RS01680 (JUNP496_0340) pilX 359786..360604 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK31_RS01685 (JUNP496_0341) pilY1 360616..364470 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK31_RS01690 (JUNP496_0342) pilY2 364483..364965 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  ACAK31_RS01695 (JUNP496_0343) pilE 364962..365387 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=110306 ACAK31_RS01680 WP_000149374.1 359786..360604(+) (pilX) [Acinetobacter baumannii strain JUNP496]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110306 ACAK31_RS01680 WP_000149374.1 359786..360604(+) (pilX) [Acinetobacter baumannii strain JUNP496]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment