Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACNPWN_RS04300 Genome accession   NZ_CP182825
Coordinates   883364..885160 (+) Length   598 a.a.
NCBI ID   WP_418223455.1    Uniprot ID   -
Organism   Clostridium isatidis strain BK32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 878364..890160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNPWN_RS04270 (ACNPWN_04270) - 878682..878867 (+) 186 WP_123962167.1 hypothetical protein -
  ACNPWN_RS04275 (ACNPWN_04275) - 878974..879696 (+) 723 WP_119865444.1 glycerophosphodiester phosphodiesterase -
  ACNPWN_RS04280 (ACNPWN_04280) - 879845..880243 (+) 399 WP_119866594.1 bacteriohemerythrin -
  ACNPWN_RS04285 (ACNPWN_04285) - 880291..880812 (-) 522 WP_236906192.1 hypothetical protein -
  ACNPWN_RS04290 (ACNPWN_04290) - 881048..881482 (+) 435 WP_418223454.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACNPWN_RS04295 (ACNPWN_04295) rcrP 881581..883371 (+) 1791 WP_119865442.1 ABC transporter ATP-binding protein Regulator
  ACNPWN_RS04300 (ACNPWN_04300) rcrQ 883364..885160 (+) 1797 WP_418223455.1 ABC transporter ATP-binding protein Regulator
  ACNPWN_RS04305 (ACNPWN_04305) - 885361..885517 (+) 157 Protein_824 IS200/IS605 family transposase -
  ACNPWN_RS04310 (ACNPWN_04310) - 885827..886525 (-) 699 WP_418223456.1 ABC transporter ATP-binding protein -
  ACNPWN_RS04315 (ACNPWN_04315) - 886525..887628 (-) 1104 WP_418223457.1 ABC transporter permease -
  ACNPWN_RS04320 (ACNPWN_04320) sstT 888207..889448 (+) 1242 WP_119865438.1 serine/threonine transporter SstT -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 66055.70 Da        Isoelectric Point: 6.3007

>NTDB_id=1102651 ACNPWN_RS04300 WP_418223455.1 883364..885160(+) (rcrQ) [Clostridium isatidis strain BK32]
MSKHMGPGSQGKPQKAKDLKGTWIKLLKYSKAYIVFIIIAIICAIGGTVFTIIGPDKLKEITNVIMEGVMTEINLDKVGE
LGMTLVIFYVSGAILSYGQQFILTTVTQRVANKLRRDISEKMNKIPLKYYDSTSHGDILSRITNDVDIIGQSMNQSIGTL
VSAVSLFIGSLIMMFKNNVTMSLAAIAATIIGFILMTVIMGKSQKYFSAQQKELGQINGHIEEIYSAHNIVKVYNGEKEA
INKFEEINERLFDSARKSQFLSGLMMPLMAFVGNFGYVAVCVVGALLAFDGKIEFGVIVAFMVYVRLFTQPLSQMGQAAT
SLQSAAAAGERVFEFLEQAELEDESHKTKLLEDVKGDVEFKNVKFGYNPDKLIIKNFSMKAKAGQKVAIVGPTGAGKTTI
VNLLMRFYETNSGQILIDGVDTKAITRENVHDLFCMVLQDTWLFEASVRDNIVYNKTGVTDEEVVNACKAVGIHHFIMTL
PHGYDTILDDKTNLSAGQKQLLTIARAMVENAPLLILDEATSSVDTRTELLIQEAMDRLTVGRTSFVIAHRLSTIKNADL
ILVMKDGDIIESGNHNELLEKGGFYAELYNSQFEQVEA

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1102651 ACNPWN_RS04300 WP_418223455.1 883364..885160(+) (rcrQ) [Clostridium isatidis strain BK32]
ATGAGTAAACACATGGGACCAGGATCACAGGGAAAACCACAAAAAGCAAAAGACTTAAAAGGAACATGGATTAAACTTTT
AAAATATTCAAAAGCTTATATAGTATTTATAATTATAGCAATTATCTGTGCTATAGGTGGAACAGTATTTACAATAATTG
GACCAGATAAATTAAAAGAAATTACTAATGTTATCATGGAAGGCGTAATGACTGAAATCAACCTTGATAAGGTTGGAGAG
TTGGGTATGACGCTTGTTATTTTCTATGTATCAGGAGCTATACTTTCTTATGGACAACAATTCATATTAACAACAGTAAC
TCAAAGAGTAGCTAATAAGTTACGTAGAGATATTTCAGAAAAAATGAATAAAATTCCTTTAAAATATTATGACTCAACAA
GTCATGGAGATATTTTAAGCCGTATTACAAATGATGTAGATATAATAGGACAAAGCATGAATCAAAGTATAGGAACTTTA
GTTTCAGCCGTATCCTTATTTATTGGTTCTTTAATAATGATGTTTAAGAATAATGTAACTATGAGTTTAGCGGCTATTGC
AGCTACAATAATTGGATTTATTCTTATGACAGTTATTATGGGGAAATCACAAAAATATTTCTCAGCTCAACAAAAGGAGC
TAGGACAAATAAATGGACATATTGAAGAAATATATTCTGCCCATAATATAGTAAAAGTTTATAATGGTGAAAAGGAAGCT
ATTAATAAATTCGAAGAAATTAATGAAAGATTATTTGATAGCGCAAGAAAATCACAATTCCTATCAGGACTTATGATGCC
TTTAATGGCCTTTGTAGGTAACTTTGGATATGTAGCAGTTTGTGTTGTTGGAGCTTTACTTGCCTTTGATGGAAAAATAG
AATTTGGTGTAATAGTTGCCTTTATGGTTTATGTTAGATTATTTACACAACCATTATCACAAATGGGTCAGGCAGCAACA
AGTTTACAATCAGCAGCTGCAGCAGGTGAAAGAGTATTTGAATTCTTAGAACAAGCAGAACTTGAAGATGAATCACATAA
AACTAAGCTTTTAGAAGATGTTAAAGGTGATGTTGAATTTAAGAATGTTAAATTTGGATATAATCCTGATAAGCTAATCA
TTAAGAATTTCTCAATGAAAGCTAAAGCAGGTCAAAAGGTTGCTATAGTTGGACCAACTGGAGCTGGTAAGACTACAATT
GTTAACTTGCTTATGAGATTCTATGAAACAAATTCAGGACAAATTTTAATAGATGGAGTAGATACAAAAGCTATTACAAG
AGAAAATGTTCATGATTTATTCTGTATGGTACTTCAAGATACATGGCTATTTGAGGCTTCAGTAAGAGATAATATAGTTT
ATAACAAAACTGGAGTAACAGATGAAGAAGTTGTAAATGCTTGTAAGGCAGTTGGTATCCATCACTTTATAATGACTTTA
CCTCATGGTTATGATACTATACTAGATGATAAAACAAATCTTTCAGCTGGACAAAAACAACTTTTAACAATTGCTAGAGC
AATGGTTGAAAATGCTCCGCTTTTAATATTAGATGAAGCAACAAGTTCAGTAGATACAAGAACAGAATTATTAATTCAAG
AAGCTATGGATAGACTTACAGTTGGTAGAACATCTTTCGTTATTGCTCATAGATTATCAACAATTAAGAATGCTGATTTA
ATCTTAGTTATGAAGGATGGGGATATCATTGAAAGTGGTAACCATAATGAATTACTAGAAAAAGGCGGTTTCTATGCAGA
GTTATATAACAGCCAATTTGAACAAGTAGAAGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(375-522)

ABC transporter transmembrane region (ABC_membrane)

(37-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.019

95.485

0.564

Multiple sequence alignment