Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACNPWN_RS04295 Genome accession   NZ_CP182825
Coordinates   881581..883371 (+) Length   596 a.a.
NCBI ID   WP_119865442.1    Uniprot ID   A0A343JCP8
Organism   Clostridium isatidis strain BK32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 876581..888371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNPWN_RS04260 (ACNPWN_04260) - 877521..877700 (+) 180 WP_119865446.1 zinc-ribbon domain-containing protein -
  ACNPWN_RS04265 (ACNPWN_04265) - 877929..878105 (+) 177 WP_418223453.1 hypothetical protein -
  ACNPWN_RS04270 (ACNPWN_04270) - 878682..878867 (+) 186 WP_123962167.1 hypothetical protein -
  ACNPWN_RS04275 (ACNPWN_04275) - 878974..879696 (+) 723 WP_119865444.1 glycerophosphodiester phosphodiesterase -
  ACNPWN_RS04280 (ACNPWN_04280) - 879845..880243 (+) 399 WP_119866594.1 bacteriohemerythrin -
  ACNPWN_RS04285 (ACNPWN_04285) - 880291..880812 (-) 522 WP_236906192.1 hypothetical protein -
  ACNPWN_RS04290 (ACNPWN_04290) - 881048..881482 (+) 435 WP_418223454.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACNPWN_RS04295 (ACNPWN_04295) rcrP 881581..883371 (+) 1791 WP_119865442.1 ABC transporter ATP-binding protein Regulator
  ACNPWN_RS04300 (ACNPWN_04300) rcrQ 883364..885160 (+) 1797 WP_418223455.1 ABC transporter ATP-binding protein Regulator
  ACNPWN_RS04305 (ACNPWN_04305) - 885361..885517 (+) 157 Protein_824 IS200/IS605 family transposase -
  ACNPWN_RS04310 (ACNPWN_04310) - 885827..886525 (-) 699 WP_418223456.1 ABC transporter ATP-binding protein -
  ACNPWN_RS04315 (ACNPWN_04315) - 886525..887628 (-) 1104 WP_418223457.1 ABC transporter permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 66461.29 Da        Isoelectric Point: 8.4659

>NTDB_id=1102650 ACNPWN_RS04295 WP_119865442.1 881581..883371(+) (rcrP) [Clostridium isatidis strain BK32]
MIKLLKYLKSKDWIFIFISLLFIVCQVWLDLKLPDYMSDITALIQTPNAEMIEIWKAGGKMLVCALGSLIASVIVGYFIS
GIAAGLSKTLRSNIFRKVESFSMHEINQFSVPSLITRSTNDITQVQMIIAMGLQVLIKAPITAVWALGKISSTSWQWTTA
TAVAVVALLIVVSGSFLLALPKFKIIQTLTDNLNKVARENLTGIRVVRAYNAEKYQEDKFEKANDEITKTNLFTGRVMGI
LMPFIQIIMSGLSLSIYWIGAYLINDVSIQNPADVVNRFSVFSDMVVFSSYAIQVVIAFMMLVIVFIMLPRAQVAANRIN
EVLDTPLTIINGTRKSDEEAQVGEIEFKNVYFKYPDAESSTDYVLENINFKVNKGETIAFIGATGSGKSTLINLIPRFYD
VTSGEVLVNGVNVKEYDKNYLTNKIGYVSQRTVMFSGTVESNVSYGDNGKEKLGIDAVKRAVEIAQGKDFVEKLEKQYES
EVAQGGTNLSGGQKQRLSIARAIHRDPEIYIFDDSFSALDYRTDKVLRAVLNKETKGKTKLIVAQRIGTIKDADKIVVLD
EGKIVGIGKHKELLKTCEVYREIAYSQLSKEELENE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1102650 ACNPWN_RS04295 WP_119865442.1 881581..883371(+) (rcrP) [Clostridium isatidis strain BK32]
ATGATAAAACTGTTGAAATATTTAAAGTCAAAGGATTGGATTTTTATTTTTATAAGTTTACTATTTATAGTATGTCAAGT
ATGGTTAGATTTAAAACTACCTGACTATATGTCAGATATAACAGCTTTAATTCAAACTCCAAATGCCGAAATGATTGAAA
TTTGGAAGGCTGGAGGCAAAATGCTTGTTTGTGCTTTAGGAAGTTTAATAGCCAGTGTTATAGTTGGATATTTTATTTCA
GGTATAGCGGCAGGCCTTTCAAAGACCTTACGTTCTAATATCTTTAGAAAAGTAGAAAGCTTTTCAATGCATGAAATTAA
TCAGTTTTCAGTTCCAAGCTTAATAACTCGTTCAACAAATGATATAACTCAAGTGCAAATGATAATAGCTATGGGTCTTC
AAGTATTAATAAAAGCTCCAATTACAGCTGTTTGGGCCCTAGGTAAAATATCAAGTACGAGTTGGCAATGGACAACAGCA
ACAGCGGTAGCAGTAGTAGCATTATTAATAGTTGTATCTGGATCATTCTTATTAGCATTACCAAAGTTTAAGATAATTCA
AACTTTAACTGATAATTTAAATAAAGTGGCTAGAGAAAATTTAACTGGTATTAGAGTTGTTAGAGCCTATAACGCAGAAA
AATATCAAGAAGATAAATTTGAAAAAGCAAACGATGAAATAACAAAGACAAACTTATTCACAGGAAGAGTAATGGGGATA
CTAATGCCTTTTATTCAAATAATAATGAGCGGTCTTAGTTTATCAATATATTGGATAGGTGCTTACTTAATAAATGATGT
ATCTATACAGAATCCAGCTGATGTTGTTAATAGATTTTCAGTATTTAGTGATATGGTTGTATTCTCATCTTATGCAATAC
AAGTTGTTATAGCATTTATGATGCTGGTTATAGTATTTATAATGCTTCCAAGAGCGCAAGTTGCTGCAAATCGTATTAAT
GAAGTTTTAGATACTCCTCTTACAATAATTAATGGAACTCGTAAATCAGATGAAGAGGCTCAGGTTGGAGAAATTGAATT
CAAAAATGTATACTTTAAATATCCTGATGCAGAAAGTTCAACTGATTATGTATTAGAAAATATAAACTTTAAGGTTAATA
AGGGAGAAACTATTGCATTTATTGGAGCTACTGGTTCTGGAAAATCAACATTAATTAATTTAATTCCAAGATTTTATGAT
GTAACTTCAGGAGAAGTATTAGTCAATGGAGTTAATGTTAAAGAATATGATAAAAATTATTTAACAAATAAAATAGGATA
TGTTTCACAAAGGACAGTAATGTTTAGTGGAACTGTAGAATCAAATGTTTCTTATGGAGATAATGGAAAAGAAAAATTAG
GAATAGATGCTGTTAAGAGAGCTGTTGAAATTGCTCAAGGTAAAGACTTTGTTGAAAAACTTGAAAAGCAATATGAAAGT
GAAGTAGCTCAAGGAGGAACAAATCTTTCTGGAGGACAAAAACAAAGACTTTCAATAGCTAGAGCTATTCATAGAGATCC
AGAAATTTATATTTTTGACGATTCCTTCTCAGCTTTAGACTATAGAACTGATAAAGTTTTAAGAGCAGTCTTAAATAAGG
AAACTAAAGGAAAGACTAAACTTATAGTAGCCCAAAGAATAGGAACAATTAAGGATGCTGATAAGATAGTTGTTTTAGAT
GAAGGAAAGATCGTTGGAATAGGAAAACATAAGGAACTTCTAAAGACTTGTGAGGTATATAGAGAAATAGCATACTCACA
ACTTTCAAAGGAGGAACTTGAAAATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-270)

ABC transporter (ABC_tran)

(365-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A343JCP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.579

100

0.53

Multiple sequence alignment