Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D3W47_RS07005 Genome accession   NZ_CP182821
Coordinates   1433967..1436150 (-) Length   727 a.a.
NCBI ID   WP_233555084.1    Uniprot ID   -
Organism   Deinococcus sp. RM     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428967..1441150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS06980 (D3W47_006980) - 1430028..1430474 (+) 447 WP_119672479.1 NUDIX domain-containing protein -
  D3W47_RS06985 (D3W47_006985) - 1430471..1430944 (+) 474 WP_119672480.1 NUDIX domain-containing protein -
  D3W47_RS06990 (D3W47_006990) - 1430923..1431633 (-) 711 WP_119672481.1 hypothetical protein -
  D3W47_RS06995 (D3W47_006995) - 1431800..1432279 (+) 480 WP_119672482.1 MarR family winged helix-turn-helix transcriptional regulator -
  D3W47_RS07000 (D3W47_007000) - 1432276..1433892 (+) 1617 WP_119672483.1 MDR family MFS transporter -
  D3W47_RS07005 (D3W47_007005) comEC 1433967..1436150 (-) 2184 WP_233555084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D3W47_RS07010 (D3W47_007010) - 1436153..1436707 (-) 555 WP_369849177.1 ComEA family DNA-binding protein -
  D3W47_RS07015 (D3W47_007015) rpmH 1436879..1437022 (+) 144 WP_046844501.1 50S ribosomal protein L34 -
  D3W47_RS07020 (D3W47_007020) rnpA 1437093..1437593 (+) 501 WP_418514572.1 ribonuclease P protein component -
  D3W47_RS07025 (D3W47_007025) yidD 1437611..1437844 (+) 234 WP_058978671.1 membrane protein insertion efficiency factor YidD -
  D3W47_RS07030 (D3W47_007030) yidC 1437841..1439451 (+) 1611 WP_199699746.1 membrane protein insertase YidC -
  D3W47_RS07035 (D3W47_007035) - 1439509..1439835 (-) 327 WP_119672978.1 hypothetical protein -
  D3W47_RS07040 (D3W47_007040) - 1439966..1440445 (-) 480 WP_119672979.1 heme-binding domain-containing protein -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 76325.01 Da        Isoelectric Point: 11.2869

>NTDB_id=1102640 D3W47_RS07005 WP_233555084.1 1433967..1436150(-) (comEC) [Deinococcus sp. RM]
MPRPRAGSLPWPVPAVAGVIGGILLALGQGWGWAALLVGAGLVLWHARPVLLVLVALGGAAGWASAHAVLTRPNHLTPWF
GAQVTVQGEWDGQFLTLRDPPARVTLAPKPTQGPGRLRVSGRLLAPEGRRTPGGFDQAAWFRAQGGLLSVTPGGALVGAR
VREFQPQGGLRGWFRRGLTTGLTERQGALMQAIELGDRGDISREQFSEGEAVRDAFARAGLAHLMALSGQNVAILTGALI
LLLTRLGAAPAWRFGLPVLLLGPYLLLVQSSASITRAVLMGGAVLLALALGRGRPDPPGVIALAALACLLLFPLWLTDVG
FQLSFLAVLALTQSERVAGLLPGRWPRWLRLGLAATLLAEAGTLPVIAGTFGQVPLVGLPANLLAGGIMALLVPLGFLAG
LLGPMALPLNMVNGVLADALLLVARTFGHAPVLSWGQVGVGGLLAYGAALLAGWLWLLGRVRAPAALSTWLACLLLTTLP
GRLHPAREVVFLDVGQGDSTLIRLPHLTVLVDAGGSVGSDYDVGAHTVVPTLRALGVRKLDVLVATHADTDHIEGAASVL
RAMPVGEVWIGQRKTDDPVLTAVLLAARERHVPVREVRRGDQVSSDGATLTVLWPAGHAWSTEDNDNSVALRLESRGWRA
AFLGDLPAPVEERLVAGPLDLLKAAHHGSRHSTGAALLAQTAPADTVVSVGRNTYGHPHPDVLTRLTQAHSRAWRTDQLG
TIRWPVP

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=1102640 D3W47_RS07005 WP_233555084.1 1433967..1436150(-) (comEC) [Deinococcus sp. RM]
GTGCCCCGGCCCAGAGCGGGCAGTCTGCCGTGGCCGGTTCCGGCGGTGGCGGGCGTGATCGGCGGCATCCTGCTGGCGCT
GGGGCAGGGGTGGGGCTGGGCGGCGCTGCTGGTCGGGGCTGGGCTGGTGCTGTGGCACGCCCGGCCGGTCCTGCTGGTGC
TGGTTGCGCTGGGTGGCGCGGCGGGCTGGGCCTCGGCTCACGCGGTCCTGACCCGCCCGAACCACCTGACACCGTGGTTC
GGGGCGCAGGTGACCGTGCAGGGCGAGTGGGACGGGCAGTTCCTGACGCTGCGCGACCCGCCCGCGCGCGTGACGCTCGC
GCCGAAGCCCACGCAGGGCCCGGGGCGGCTGCGCGTGTCGGGTCGCCTGCTCGCCCCGGAGGGCCGCCGCACGCCCGGGG
GCTTCGATCAGGCGGCGTGGTTCCGCGCGCAGGGTGGGCTGCTGAGCGTCACGCCGGGCGGCGCGCTGGTGGGCGCGCGG
GTACGGGAGTTCCAGCCTCAGGGCGGGCTGCGCGGCTGGTTCCGCCGGGGCCTCACCACGGGTCTCACGGAGCGTCAGGG
GGCGCTGATGCAGGCCATCGAACTCGGCGACCGGGGCGATATCAGCCGCGAGCAGTTCAGCGAGGGTGAGGCGGTGCGCG
ACGCCTTCGCGCGGGCGGGGCTGGCGCACCTGATGGCGCTGTCCGGGCAGAACGTGGCGATCCTGACCGGCGCGCTGATC
CTGCTGCTGACGCGGCTGGGCGCGGCTCCCGCGTGGCGGTTCGGCCTGCCGGTGCTGTTGCTCGGGCCGTACCTGCTGCT
CGTGCAGTCCTCGGCGAGCATCACGCGGGCGGTCCTGATGGGCGGCGCGGTGCTGCTGGCGCTGGCGCTGGGGCGCGGGC
GGCCCGACCCGCCGGGCGTGATCGCGCTGGCGGCGCTGGCGTGCCTGCTGCTGTTCCCGCTGTGGCTGACGGACGTGGGC
TTTCAGCTGTCGTTCCTGGCGGTGCTGGCCCTGACGCAGTCCGAGCGGGTGGCGGGGCTGCTGCCGGGGCGCTGGCCGCG
CTGGCTGCGGCTGGGGCTGGCGGCGACCCTGCTGGCCGAGGCGGGCACGCTGCCGGTCATCGCGGGGACGTTCGGGCAGG
TGCCGCTCGTGGGTCTGCCCGCCAACCTGCTGGCCGGGGGGATCATGGCCCTGCTCGTGCCGCTGGGGTTCCTGGCGGGG
CTGCTGGGACCAATGGCACTGCCGCTCAACATGGTGAACGGCGTCCTGGCCGACGCGCTGCTGCTGGTGGCGCGCACTTT
CGGGCACGCCCCGGTCCTGAGCTGGGGTCAGGTGGGCGTGGGGGGCCTCCTGGCCTACGGGGCGGCGCTGCTGGCCGGGT
GGCTGTGGCTGCTGGGCCGCGTCCGCGCGCCTGCCGCGCTGAGCACGTGGCTGGCCTGCCTGCTCCTGACGACGCTGCCG
GGGCGACTGCACCCCGCGCGCGAGGTCGTCTTTCTGGACGTGGGTCAGGGGGACAGCACCCTGATCCGCCTGCCCCACCT
GACGGTCCTCGTGGACGCGGGCGGCTCGGTGGGCAGCGACTACGACGTGGGCGCGCACACGGTCGTGCCCACCCTGCGTG
CCCTGGGCGTGCGGAAGCTGGACGTGCTGGTCGCCACCCACGCGGACACGGATCACATCGAGGGCGCGGCGAGCGTCCTG
CGCGCCATGCCGGTCGGGGAGGTCTGGATCGGGCAGCGCAAGACGGACGACCCGGTGCTGACTGCCGTGCTGCTGGCCGC
GCGGGAGCGGCACGTTCCGGTGCGGGAGGTCCGCCGGGGCGATCAGGTCAGCTCGGACGGCGCGACCCTGACCGTCCTGT
GGCCCGCCGGACACGCGTGGAGCACGGAGGACAACGACAACAGCGTCGCCCTGCGCCTGGAGTCGCGCGGGTGGCGGGCC
GCGTTCCTGGGCGACCTGCCCGCCCCCGTCGAGGAACGACTCGTCGCCGGACCGCTGGACCTCCTGAAGGCCGCGCACCA
CGGCAGCCGCCACAGCACCGGCGCGGCCCTCCTGGCGCAGACCGCCCCCGCCGACACCGTCGTCAGCGTGGGGCGGAACA
CCTACGGGCACCCTCACCCGGACGTGCTGACCCGGCTGACGCAGGCGCACTCGCGGGCGTGGCGCACCGATCAGCTGGGC
ACGATCCGCTGGCCTGTGCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(210-458)

Beta-lactamase superfamily domain (Lactamase_B_2)

(509-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.659

100

0.657

Multiple sequence alignment