Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   D3W47_RS04385 Genome accession   NZ_CP182821
Coordinates   876159..876710 (-) Length   183 a.a.
NCBI ID   WP_119673918.1    Uniprot ID   A0A418QG45
Organism   Deinococcus sp. RM     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 871159..881710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS04350 (D3W47_004350) - 871554..872426 (-) 873 WP_119673913.1 PSP1 domain-containing protein -
  D3W47_RS04355 (D3W47_004355) rocF 872526..873425 (-) 900 WP_119673914.1 arginase -
  D3W47_RS04360 (D3W47_004360) - 873543..873749 (-) 207 WP_369849981.1 GNAT family N-acetyltransferase -
  D3W47_RS04365 (D3W47_004365) - 873671..874072 (-) 402 WP_233555258.1 hypothetical protein -
  D3W47_RS04370 (D3W47_004370) - 874182..874829 (+) 648 WP_119673915.1 metallophosphoesterase family protein -
  D3W47_RS04375 (D3W47_004375) - 875184..875606 (+) 423 WP_119673916.1 hypothetical protein -
  D3W47_RS04380 (D3W47_004380) - 875616..876050 (+) 435 WP_119673917.1 hypothetical protein -
  D3W47_RS04385 (D3W47_004385) ddrB 876159..876710 (-) 552 WP_119673918.1 single-stranded DNA-binding protein Machinery gene
  D3W47_RS04390 (D3W47_004390) - 876767..877591 (-) 825 WP_233555259.1 acyl-CoA acyltransferase -
  D3W47_RS04395 (D3W47_004395) menC 877597..878706 (-) 1110 WP_119673919.1 o-succinylbenzoate synthase -
  D3W47_RS04405 (D3W47_004405) - 881004..881258 (+) 255 WP_119673077.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20389.74 Da        Isoelectric Point: 7.4655

>NTDB_id=1102638 D3W47_RS04385 WP_119673918.1 876159..876710(-) (ddrB) [Deinococcus sp. RM]
MLHIEFTTDLGAKVTVDVENASALLDTQRQYGRLGWTSGEIPSGGYQFPLENEPDFDWHLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPEHIREKSDGEFEYVTLAIFRGGRRQDRYATPGARPGTPTQAPAQAARP
APTRPAPTQPRPAPTRADDEPPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1102638 D3W47_RS04385 WP_119673918.1 876159..876710(-) (ddrB) [Deinococcus sp. RM]
ATGTTACATATTGAATTCACCACCGACCTGGGCGCCAAAGTCACCGTGGACGTCGAGAACGCCTCCGCGCTCCTCGACAC
CCAGCGGCAGTACGGCCGCCTCGGCTGGACCAGCGGCGAGATCCCCAGCGGCGGCTACCAGTTCCCGCTGGAAAACGAAC
CCGACTTCGACTGGCACCTCATCGGCGCGCGCAAGTGGACCAGCCCCGACGGCGAGGAACTCGTCATCCACAAGGGGCAC
GCCTACCGCCGCCGCGAACTCGAAGCGGTCGACAGCCGCAAGATGAAACTCCCCGCCGCCGTCAAGTACTCCCGCGGCGC
GAAAAGCACCGACCCCGAGCACATCCGCGAGAAGAGCGACGGTGAATTCGAGTACGTGACCCTCGCCATCTTCCGCGGCG
GCCGCCGCCAGGACCGCTACGCCACGCCCGGCGCCCGCCCCGGCACGCCCACGCAGGCCCCCGCCCAGGCCGCGCGCCCC
GCCCCCACCCGCCCGGCCCCCACGCAGCCCCGACCTGCCCCGACCCGCGCGGACGACGAACCGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418QG45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

74.39

89.617

0.667

Multiple sequence alignment