Detailed information NTG1102637

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D3W47_RS03610
• Genome accession: NZ_CP182821
• Coordinates: 715461..716612 (+)
• Length: 383 a.a.
• NCBI ID: WP_119673128.1
• Uniprot ID: -
• Organism: Deinococcus sp. RM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 710461..721612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3W47_RS03595 (D3W47_003595)	-	711224..713089 (+)	1866	WP_119673130.1	alpha/beta fold hydrolase	-
D3W47_RS03600 (D3W47_003600)	rimO	713197..714687 (+)	1491	WP_062159878.1	30S ribosomal protein S12 methylthiotransferase RimO	-
D3W47_RS03605 (D3W47_003605)	-	714901..715410 (+)	510	WP_119673129.1	hypothetical protein	-
D3W47_RS03610 (D3W47_003610)	pilD	715461..716612 (+)	1152	WP_119673128.1	prepilin peptidase	Machinery gene
D3W47_RS03615 (D3W47_003615)	-	716694..717131 (-)	438	WP_046845142.1	hypothetical protein	-
D3W47_RS03620 (D3W47_003620)	-	717312..718757 (+)	1446	WP_119673127.1	aldehyde dehydrogenase family protein	-
D3W47_RS03625 (D3W47_003625)	mobA	718754..719320 (+)	567	WP_119673126.1	molybdenum cofactor guanylyltransferase	-
D3W47_RS03630 (D3W47_003630)	-	719340..719831 (-)	492	WP_199699760.1	DUF4385 domain-containing protein	-
D3W47_RS03635 (D3W47_003635)	-	720053..720658 (-)	606	WP_119673125.1	Dps family protein	-
D3W47_RS03640 (D3W47_003640)	-	720707..721609 (-)	903	WP_119673124.1	MBL fold metallo-hydrolase	-

Sequence

Protein

• Length: 383 a.a.
• Molecular weight: 40283.58 Da
• Isoelectric Point: 7.2409

>NTDB_id=1102637 D3W47_RS03610 WP_119673128.1 715461..716612(+) (pilD) [Deinococcus sp. RM]
MTPDVLLVIFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPNCDHRLGVADLVPVFSWLSLGGKCRYCKSPIKARYPV
VELLTGIGYAAIAALFPPLTVGWGALGLMVLFTLLLVGSAIDLDTYTIPDELTLPGVALGVLFGFLNGQAGVEGLPDLAG
AVQGALLGAGVVVAINQFGSWVLRRFRERSFPEFPIGYQQISLGLLAGAWLGPWWGAGVGLLSALVNVAARRVIRIPELL
TLGGLLVSVMLGSAGYGPGMILMVQGALAAAGAVSLACGVYWWLHWRRHREDDGAADDTQVDASAMGFGDVKLAAVIGAF
LGWERLLLALVVAVFAGAIFGVAQLALRSENRVKFGPFLALGAVVALLWGGALIGSYREMLGL

Nucleotide

• Length: 1152 bp

>NTDB_id=1102637 D3W47_RS03610 WP_119673128.1 715461..716612(+) (pilD) [Deinococcus sp. RM]
GTGACCCCTGACGTCCTTCTCGTGATCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGCTCGTTCTCGAATGTGCTCATCTG
GCGGCTGCCGCGCGGGGAGAACATCGCGTTCCCGCCCAGCCACTGCCCGAACTGCGACCACCGCCTTGGCGTCGCCGATC
TGGTGCCCGTGTTCTCCTGGCTGAGCCTGGGTGGGAAGTGCCGCTACTGCAAATCTCCCATCAAGGCGCGCTACCCGGTC
GTGGAACTCCTGACCGGGATCGGGTACGCGGCCATCGCGGCGCTGTTCCCGCCGCTGACGGTCGGCTGGGGCGCGCTGGG
CCTGATGGTTCTGTTCACCCTGCTGCTGGTGGGCAGCGCCATCGACCTGGACACGTACACCATTCCCGACGAGCTGACCC
TGCCCGGCGTGGCGCTGGGCGTCCTGTTCGGCTTCCTGAACGGACAGGCGGGCGTGGAGGGCCTCCCGGACCTTGCGGGC
GCGGTGCAGGGCGCGCTGCTGGGCGCCGGGGTGGTCGTGGCGATCAACCAGTTCGGGTCGTGGGTGCTGCGCCGCTTCCG
CGAGCGCTCCTTCCCGGAATTCCCCATCGGGTACCAGCAGATCAGCCTCGGCCTTCTGGCGGGCGCGTGGCTCGGGCCGT
GGTGGGGGGCGGGCGTGGGCCTGCTGTCTGCTCTGGTGAACGTCGCGGCGCGCCGCGTGATCCGCATCCCGGAACTGCTC
ACGCTGGGCGGGCTGCTCGTCAGCGTGATGCTGGGCAGCGCCGGGTACGGCCCGGGCATGATCCTGATGGTGCAGGGCGC
TCTGGCGGCCGCTGGGGCGGTGTCGCTCGCCTGCGGCGTGTACTGGTGGCTCCACTGGCGCCGCCACCGCGAGGACGACG
GCGCCGCCGACGACACGCAGGTGGACGCCAGCGCCATGGGCTTCGGGGACGTGAAACTCGCCGCCGTGATCGGCGCGTTC
CTGGGCTGGGAGCGGCTGCTGCTGGCGCTGGTCGTCGCGGTGTTCGCCGGGGCTATCTTCGGCGTGGCGCAGCTCGCCCT
GCGTAGCGAGAACCGCGTGAAGTTCGGGCCGTTCCTCGCGCTGGGGGCCGTGGTGGCCCTGCTGTGGGGCGGCGCGCTGA
TCGGCAGTTACCGCGAGATGCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

• Type IV leader peptidase family (Peptidase_A24) (234-342)

• Type IV leader peptidase family (Peptidase_A24) (109-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	73.779	100	0.749