Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACM641_RS09035 Genome accession   NZ_CP182815
Coordinates   1761872..1763563 (+) Length   563 a.a.
NCBI ID   WP_418302533.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain A15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756872..1768563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM641_RS09010 xseB 1757289..1757522 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  ACM641_RS09015 - 1757526..1758407 (+) 882 WP_025116086.1 polyprenyl synthetase family protein -
  ACM641_RS09020 dxs 1758569..1760470 (+) 1902 WP_025116087.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACM641_RS09025 - 1760470..1761288 (+) 819 WP_025116088.1 TlyA family RNA methyltransferase -
  ACM641_RS09030 ahrC 1761389..1761838 (+) 450 WP_025116089.1 transcriptional regulator AhrC/ArgR -
  ACM641_RS09035 recN 1761872..1763563 (+) 1692 WP_418302533.1 DNA repair protein RecN Machinery gene
  ACM641_RS09040 - 1763685..1764632 (+) 948 WP_144787522.1 SpoIVB peptidase S55 domain-containing protein -
  ACM641_RS09045 spo0A 1765026..1765817 (+) 792 WP_008179911.1 sporulation transcription factor Spo0A -
  ACM641_RS09050 - 1766012..1766197 (+) 186 WP_036196633.1 hypothetical protein -
  ACM641_RS09055 - 1766531..1768102 (+) 1572 WP_025116093.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63483.09 Da        Isoelectric Point: 4.6482

>NTDB_id=1102542 ACM641_RS09035 WP_418302533.1 1761872..1763563(+) (recN) [Lysinibacillus fusiformis strain A15]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKQHINLLDQFAEDQLQPVQ
KTYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKEIEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAATVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKTELNELLNRDEILQVKERRVHEMESVLNELAAELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1102542 ACM641_RS09035 WP_418302533.1 1761872..1763563(+) (recN) [Lysinibacillus fusiformis strain A15]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTGAGTTTTTCTGAAGGTTTGACCGTACT
AACTGGGGAAACTGGTGCTGGTAAATCTATTATTATTGATGCTGTTCATTTACTTGCTGGTGGACGGGGAAATACTGAAT
TTATTCGTCATGGGGCAAGAAAAGCTGAATTAGGTGGCTTATTTCAAATTTCGAATTCCACGCATCCTGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATTGAAGAAGATACAGTAATTTTACGTCGTGATTTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTCGTGCCATTATCAGTACTGAGAGAAATTGGTGGGAGCCTCATTGATATTCATGGCCAACATG
AAAACCAAGAGCTGATGGATGAAAAACAGCATATCAATTTACTCGACCAGTTTGCAGAAGATCAGCTGCAGCCTGTTCAA
AAAACATACAGCGAACAATATGAAGAATATCGATTGCTGAAAAAGGACTTAGCCTCGATTTCCATCGATGAACAATTGAT
GGCACAGCGCATTGATTTGTATCAATTCCAAATAAAAGAGATAGAAGAAGCGAATTTAAGGCTAGGTGAGGAAGATGAGC
TTCTTGATGAACGTCGTCGTCTCATGAATTACAATAAAATTTTTGAACGATCTAGTGCTGCCTATGAGGCCATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGTAATGCAATGGGTGCCTTGGACGATGCAGCAACAGTGGATGAGCAATTCAAAGA
AGCTTCTGAGGCAGTGACAACAGCATTTTATGCACTTCAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAGTTGG
AGTTCGACCCAGCGCGTTTAAATGAAGTGGAACAACGATTAGCATTATTCCAAAATTTAAAACGCAAATATGGTTCGACA
GTGGAGGACATCTTAGCGTATTTTGAAAAAATAAAAACAGAGTTAAATGAACTGCTAAATCGCGATGAAATTTTGCAGGT
AAAAGAACGAAGAGTGCACGAAATGGAATCGGTGCTCAATGAGCTTGCTGCAGAACTTTCAACTGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGTGAATTACATATGGAAAAAGCTAAATTTATTGTCAATTTTGAA
GAATTACCTTATTTCGATGCGAATGGAAAAGATCAAATTATTTTCTATATTTCTACCAATGTTGGAGAACCGCCCAAGTC
CTTACCGAAAATTGCTTCGGGAGGAGAATTATCACGAATGATGCTGGCGCTGAAAACCATTTTTTCTTCTTCTAATGGTA
TCACATCCATCATTTTTGATGAAGTGGACACAGGAGTTAGTGGAAGAGTGGCACAAGCCATTGCAGAAAAAATTGCAGCG
GTATCCATTAATTCCCAAGTTTTATGTATTTCCCATTTACCTCAAGTTGCTGCGATGGCTGATCATCATTACTTTATAAA
AAAAGAAGTCGAGCATGATCGAACATTTACTTCTTTATCAGAAATTGATCAAAAGGCACGGATTGAGGAAGTCAGCCGTA
TGATGTCTGGGACAGAAATTACTGCTTTAACGCTACAGCATGCAACGGAGTTATTAACAATGGCAGAAGAGCGTAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.206

100

0.545

Multiple sequence alignment