Detailed information NTG1102519

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACNOGP_RS01110
• Genome accession: NZ_CP182814
• Coordinates: 263243..264610 (+)
• Length: 455 a.a.
• NCBI ID: WP_418213872.1
• Uniprot ID: -
• Organism: Bacteroides difficilis strain 17-4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 258243..269610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNOGP_RS01100 (ACNOGP_01100)	thrA	259278..261713 (-)	2436	WP_007756967.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-
ACNOGP_RS01105 (ACNOGP_01105)	-	262117..263154 (+)	1038	WP_418213871.1	asparaginase	-
ACNOGP_RS01110 (ACNOGP_01110)	radA	263243..264610 (+)	1368	WP_418213872.1	DNA repair protein RadA	Machinery gene
ACNOGP_RS01115 (ACNOGP_01115)	-	264658..265032 (+)	375	WP_186968428.1	GxxExxY protein	-
ACNOGP_RS01120 (ACNOGP_01120)	-	265070..266719 (+)	1650	WP_418213873.1	NAD(P)/FAD-dependent oxidoreductase	-
ACNOGP_RS01125 (ACNOGP_01125)	-	266738..267340 (+)	603	WP_007756979.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50083.81 Da
• Isoelectric Point: 6.1305

>NTDB_id=1102519 ACNOGP_RS01110 WP_418213872.1 263243..264610(+) (radA) [Bacteroides difficilis strain 17-4]
MAKEKTIYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPVNRRPVSGIETQKPKPLALADIVADDEPRINMHDDELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSSISSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIVQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=1102519 ACNOGP_RS01110 WP_418213872.1 263243..264610(+) (radA) [Bacteroides difficilis strain 17-4]
ATGGCAAAAGAGAAAACCATATATGTATGCAGTAATTGTGGACAGGATTCACCGAAGTGGGTGGGTAAATGTCCGTCCTG
TGGGGAGTGGAATACGTATGTAGAAGAAATTGTGAGAAAAGAGCCTGTCAACCGCCGTCCGGTGTCGGGGATTGAAACGC
AAAAGCCCAAACCGCTTGCGCTTGCCGATATAGTGGCGGATGACGAACCGCGTATCAATATGCATGATGACGAATTGAAT
CGTGTATTGGGCGGGGGACTGGTACCGGGTTCTCTGGTCCTGATAGGCGGTGAACCGGGAATCGGCAAATCTACGCTCGT
CATGCAGACTGTATTGCACATGCCGGAAAAGAAGATTCTTTATGTATCGGGCGAAGAGAGTGCACGTCAACTAAAGCTCC
GTGCCGACCGTCTCTCTTCTATTTCCAGTGACTGTCTCATTGTTTGCGAGACTTCCCTCGAACAGATTTATGTACATATC
AAGAATACGAATCCCGATCTGGTGATCATCGACTCCATACAGACTATTTCTACCGAGAGTATCGAATCGTCTCCCGGAAG
TATCGTACAGGTCAGAGAGTGTTCGGCGTCTATTCTTCGTTTTGCGAAAGAAACGCATACACCTGTGTTGCTGATCGGGC
ATATTAATAAAGAAGGAAGCATTGCAGGACCTAAAGTGCTGGAGCACATCGTAGATACAGTTCTTCAATTTGAAGGTGAC
CAACATTATATGTACCGTATTCTACGCAGTATCAAGAATCGTTTCGGTAGTACGGCAGAGTTAGGTATTTATGAGATGCG
TCAGGATGGGTTGCGCCAAGTCAGCAATCCTTCCGAGCTTTTGCTAAGTCAGGATCATGAGGGGATGAGCGGGGTAGCCA
TTGCTTCCGCCATTGAAGGAATCCGCCCGTTCTTGATTGAGACGCAGGCTTTGGTGAGTTCTGCTGTCTATGGAAATCCG
CAACGCTCGGCAACCGGTTTTGATTTAAGAAGGATGAATATGCTGCTGGCTGTTCTCGAAAAGCGCGTAGGATTTAAGTT
GGCCCAGAAAGATGTGTTCCTGAATATCGCCGGAGGATTGAAAGTTAATGATCCGGCCATTGATTTGTCTGTTATCAGCG
CCATCCTTTCTTCGAATATGGATACGGCTATCGAACCGGAAGTTTGCATGGCAGGAGAAATCGGCCTGTCGGGGGAGATA
CGCCCCGTGAATCGAATTGAACAACGTATCGGTGAAGCTGAAAAGTTAGGTTTCAAACGTTTCTTGCTGCCTAAATATAA
CTTGCAAGGGATCGACACCCAAAAACTGAAGATAGAACTAGTACCGGTGAGGAAAGTGGAAGAGGCGTTCAGGGCTTTAT
TCGGTTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (72-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.304	100	0.519
radA	Streptococcus mitis SK321	48.132	100	0.481
radA	Streptococcus pneumoniae Rx1	48.132	100	0.481
radA	Streptococcus pneumoniae D39	48.132	100	0.481
radA	Streptococcus pneumoniae R6	48.132	100	0.481
radA	Streptococcus pneumoniae TIGR4	48.132	100	0.481
radA	Streptococcus mitis NCTC 12261	48.132	100	0.481