Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNOJ3_RS15405 Genome accession   NZ_CP182813
Coordinates   3675075..3676460 (+) Length   461 a.a.
NCBI ID   WP_346086185.1    Uniprot ID   -
Organism   Sphingobacterium detergens strain MGMM185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3670075..3681460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNOJ3_RS15385 xseB 3670436..3670663 (-) 228 WP_418359144.1 exodeoxyribonuclease VII small subunit -
  ACNOJ3_RS15390 xseA 3670707..3671951 (-) 1245 WP_418359145.1 exodeoxyribonuclease VII large subunit -
  ACNOJ3_RS15395 - 3672162..3673886 (+) 1725 WP_418359146.1 serine hydrolase domain-containing protein -
  ACNOJ3_RS15400 - 3673883..3675043 (+) 1161 WP_418359147.1 dipeptidase -
  ACNOJ3_RS15405 radA 3675075..3676460 (+) 1386 WP_346086185.1 DNA repair protein RadA Machinery gene
  ACNOJ3_RS15410 - 3676562..3677242 (-) 681 WP_223584113.1 peroxiredoxin family protein -
  ACNOJ3_RS15415 - 3677315..3678463 (+) 1149 WP_223584114.1 methionine aminotransferase -
  ACNOJ3_RS15420 nagB 3678605..3680533 (+) 1929 WP_223584115.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50630.07 Da        Isoelectric Point: 7.0182

>NTDB_id=1102516 ACNOJ3_RS15405 WP_346086185.1 3675075..3676460(+) (radA) [Sphingobacterium detergens strain MGMM185]
MAKTKSAYFCQNCGYEAPKWMGQCPSCKQWNSFVEEVVEKSSSKVPEWRSTTTTGNTKRANKAAIIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGTAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDIPIKTSLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDLFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1102516 ACNOJ3_RS15405 WP_346086185.1 3675075..3676460(+) (radA) [Sphingobacterium detergens strain MGMM185]
ATGGCAAAAACAAAATCTGCATATTTCTGTCAAAACTGTGGCTATGAGGCTCCCAAATGGATGGGACAGTGTCCTTCGTG
CAAACAATGGAATAGTTTCGTGGAGGAAGTGGTCGAAAAGTCAAGCTCAAAAGTTCCTGAATGGCGAAGCACAACAACAA
CAGGGAATACAAAGCGAGCAAACAAGGCGGCTATTATTCATGAGATTGTATATCAGGATGAATCGCGTATCTTGACTCCA
GATCAGGAGTTTAATCGGGTGTTGGGAGGGGGAATCGTTCCGGGTTCCCTGGTTTTGATAGGAGGCGAACCCGGAATTGG
AAAATCAACATTAATGCTCCAGCTGGCTCTGTCCATTCCACAGGTCAAAACCCTCTATATTTCCGGAGAGGAGAGTGAGC
AGCAAATCAAGATGCGGGCCGAGCGATTGTCACAATCCTCTAAAGCCAATTGTTATATTCTGACAGAAACATCGACACAA
AATATTTTCAAGCAGATCGAGACAGTACAACCTAATGTCATTGTCATAGATTCCATCCAAACCTTGCATTCCGCGCAGAT
TGAATCGGCACCGGGGTCGGTTTCCCAAGTGCGGGAATGTACAGCCGAATTACTCCGGTTTGCCAAAGAAACCAGTACCC
CAGTATTTATTGTAGGCCATATTACCAAAGATGGTTCGATTGCTGGACCGAAAGTCTTAGAGCATATGGTCGATACCGTA
CTCCAATTTGAGGGTGACCGCCATCACGTCTATCGTATATTGCGTGCGGTAAAAAATAGGTTTGGCTCCGCTTCGGAATT
GGGAATATATGAAATGCAGGGTTCCGGGTTGCGAGAGGTGTCAAATCCGTCCGAAATTATGATTTCACAGCGAGATGAAC
CCGTGAGTGGTGTTTCCATTGCGGCTATGCTCGAGGGAATGCGACCGATGATGATTGAAGTTCAGGCTTTGGTGAGCAAT
TCCGCATTTGGTACTGCCCAACGTTCATCTACAGGTTATGATACAAAACGATTAAACATGTTGTTGGCTGTATTGGAAAA
GCGATTTGGTTTTCGGTTAAGCGCACAGGATGTATTTTTGAATATTGCCGGAGGGCTTCGCGTTGAAGATCCAGCCATCG
ATCTGGCAGTTATCGTGGCTATTATTTCGTCACAACAAGATATTCCGATAAAGACCAGCCTGACCTTTGCTGGCGAAGTA
GGTTTATCTGGAGAGATCAGAGCTGTCAACCGGATTGAACAACGTATTCAAGAAGCAGAGAAATTGGGCTTTGATGGGAT
CTTTATTTCCAAGTTTAATACCAAAGGATTGGATGCCAAGAAATATAATATTGCCATTAGACCAGTAGCTAAATTGGAAG
ACCTGTTTAGCGCTTTATTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

51.627

100

0.516
  radA Streptococcus mitis NCTC 12261

51.627

100

0.516
  radA Streptococcus pneumoniae Rx1

51.627

100

0.516
  radA Streptococcus pneumoniae R6

51.627

100

0.516
  radA Streptococcus pneumoniae TIGR4

51.627

100

0.516
  radA Streptococcus mitis SK321

51.41

100

0.514
  radA Bacillus subtilis subsp. subtilis str. 168

53.273

96.095

0.512

Multiple sequence alignment