Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACNLFM_RS07740 | Genome accession | NZ_CP182614 |
| Coordinates | 1638581..1639186 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica serovar Infantis strain N24-1657-GF213 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1604980..1647446 | 1638581..1639186 | within | 0 |
Gene organization within MGE regions
Location: 1604980..1647446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNLFM_RS07610 (ACNLFM_07610) | ldtD | 1605020..1606867 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| ACNLFM_RS07615 (ACNLFM_07615) | - | 1607127..1607675 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| ACNLFM_RS07620 (ACNLFM_07620) | - | 1607703..1608350 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| ACNLFM_RS07625 (ACNLFM_07625) | - | 1608448..1609703 (+) | 1256 | WP_086016038.1 | IS3-like element ISSen1 family transposase | - |
| ACNLFM_RS07630 (ACNLFM_07630) | aspC | 1609727..1610917 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| ACNLFM_RS07635 (ACNLFM_07635) | ompF | 1611102..1612193 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| ACNLFM_RS07640 (ACNLFM_07640) | asnS | 1612800..1614200 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| ACNLFM_RS07645 (ACNLFM_07645) | - | 1614401..1614862 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| ACNLFM_RS07650 (ACNLFM_07650) | dpaL | 1615179..1616393 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| ACNLFM_RS07655 (ACNLFM_07655) | - | 1616639..1618072 (+) | 1434 | WP_000893191.1 | alanine/glycine:cation symporter family protein | - |
| ACNLFM_RS07660 (ACNLFM_07660) | pncB | 1618153..1619355 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| ACNLFM_RS07665 (ACNLFM_07665) | pepN | 1619622..1622234 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| ACNLFM_RS07670 (ACNLFM_07670) | pyrD | 1622442..1623452 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| ACNLFM_RS07675 (ACNLFM_07675) | zapC | 1623618..1624160 (+) | 543 | WP_023993511.1 | cell division protein ZapC | - |
| ACNLFM_RS07680 (ACNLFM_07680) | - | 1624157..1625266 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| ACNLFM_RS07685 (ACNLFM_07685) | rlmKL | 1625365..1627473 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| ACNLFM_RS07690 (ACNLFM_07690) | - | 1627486..1629393 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| ACNLFM_RS07695 (ACNLFM_07695) | pqiA | 1629408..1630661 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACNLFM_RS07700 (ACNLFM_07700) | pqiB | 1630666..1632306 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| ACNLFM_RS07705 (ACNLFM_07705) | pqiC | 1632303..1632866 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACNLFM_RS07710 (ACNLFM_07710) | rmf | 1633122..1633289 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| ACNLFM_RS07715 (ACNLFM_07715) | fabA | 1633389..1633907 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACNLFM_RS07720 (ACNLFM_07720) | - | 1633976..1635736 (-) | 1761 | WP_000156457.1 | AAA family ATPase | - |
| ACNLFM_RS07725 (ACNLFM_07725) | matP | 1635922..1636374 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| ACNLFM_RS07730 (ACNLFM_07730) | ompA | 1636446..1637498 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| ACNLFM_RS07735 (ACNLFM_07735) | sulA | 1637855..1638364 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| ACNLFM_RS07740 (ACNLFM_07740) | sxy/tfoX | 1638581..1639186 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| ACNLFM_RS07745 (ACNLFM_07745) | yccS | 1639173..1641326 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| ACNLFM_RS07750 (ACNLFM_07750) | - | 1641345..1641791 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| ACNLFM_RS07755 (ACNLFM_07755) | helD | 1641915..1643969 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| ACNLFM_RS07760 (ACNLFM_07760) | mgsA | 1644005..1644463 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| ACNLFM_RS07765 (ACNLFM_07765) | - | 1644558..1645220 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| ACNLFM_RS07770 (ACNLFM_07770) | - | 1645394..1645807 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| ACNLFM_RS07775 (ACNLFM_07775) | hspQ | 1645852..1646169 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| ACNLFM_RS07780 (ACNLFM_07780) | rlmI | 1646227..1647438 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=1102383 ACNLFM_RS07740 WP_001202375.1 1638581..1639186(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain N24-1657-GF213]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=1102383 ACNLFM_RS07740 WP_001202375.1 1638581..1639186(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain N24-1657-GF213]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |