Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACAK30_RS17300 Genome accession   NZ_AP031579
Coordinates   3616263..3617264 (-) Length   333 a.a.
NCBI ID   WP_000079192.1    Uniprot ID   A0A7U3Y2W9
Organism   Acinetobacter baumannii strain JUNP406     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611263..3622264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK30_RS17290 (JUNP406_3445) pilY1 3611582..3615436 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK30_RS17295 (JUNP406_3446) pilX 3615448..3616266 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK30_RS17300 (JUNP406_3447) pilW 3616263..3617264 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  ACAK30_RS17305 (JUNP406_3448) pilV 3617265..3617825 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACAK30_RS17310 (JUNP406_3449) fimU 3617819..3618292 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK30_RS17315 (JUNP406_3450) ispH 3618462..3619412 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK30_RS17320 (JUNP406_3451) gmk 3619535..3620164 (+) 630 WP_000015937.1 guanylate kinase -
  ACAK30_RS17325 (JUNP406_3452) rpoZ 3620237..3620515 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK30_RS17330 - 3620554..3620684 (+) 131 Protein_3378 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35788.44 Da        Isoelectric Point: 6.4861

>NTDB_id=110237 ACAK30_RS17300 WP_000079192.1 3616263..3617264(-) (pilW) [Acinetobacter baumannii strain JUNP406]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPRGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTANNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=110237 ACAK30_RS17300 WP_000079192.1 3616263..3617264(-) (pilW) [Acinetobacter baumannii strain JUNP406]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTCGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGCGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment