Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACNIHG_RS27430 Genome accession   NZ_CP182582
Coordinates   6045346..6046299 (-) Length   317 a.a.
NCBI ID   WP_251643098.1    Uniprot ID   -
Organism   Paenibacillus xylanilyticus strain L-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6040346..6051299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNIHG_RS27410 (ACNIHG_27410) - 6040842..6042425 (-) 1584 WP_153980246.1 spore germination protein -
  ACNIHG_RS27415 (ACNIHG_27415) - 6042603..6043589 (-) 987 WP_418039624.1 siderophore ABC transporter substrate-binding protein -
  ACNIHG_RS27420 (ACNIHG_27420) - 6043629..6044387 (-) 759 WP_095360058.1 ABC transporter ATP-binding protein -
  ACNIHG_RS27425 (ACNIHG_27425) - 6044381..6045343 (-) 963 WP_153980249.1 iron chelate uptake ABC transporter family permease subunit -
  ACNIHG_RS27430 (ACNIHG_27430) ceuB 6045346..6046299 (-) 954 WP_251643098.1 ABC transporter permease Machinery gene
  ACNIHG_RS27435 (ACNIHG_27435) - 6046542..6046877 (-) 336 WP_221805809.1 hypothetical protein -
  ACNIHG_RS27440 (ACNIHG_27440) - 6046933..6047634 (-) 702 WP_251643096.1 pirin family protein -
  ACNIHG_RS27445 (ACNIHG_27445) - 6047848..6048258 (-) 411 WP_153980253.1 DoxX family protein -
  ACNIHG_RS27450 (ACNIHG_27450) - 6048300..6049160 (-) 861 WP_153980254.1 M56 family metallopeptidase -
  ACNIHG_RS27455 (ACNIHG_27455) - 6049162..6049578 (-) 417 WP_095291044.1 BlaI/MecI/CopY family transcriptional regulator -
  ACNIHG_RS27460 (ACNIHG_27460) - 6049838..6051298 (-) 1461 WP_221805812.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34892.00 Da        Isoelectric Point: 10.0470

>NTDB_id=1102355 ACNIHG_RS27430 WP_251643098.1 6045346..6046299(-) (ceuB) [Paenibacillus xylanilyticus strain L-2]
MKLGYMLIALVVLSFVYIFIGNSDISPLDIFHLTPVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASSLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFATNLGLAYRRVVNLGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKANGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1102355 ACNIHG_RS27430 WP_251643098.1 6045346..6046299(-) (ceuB) [Paenibacillus xylanilyticus strain L-2]
ATGAAGTTAGGTTATATGTTGATCGCACTGGTTGTTCTGTCTTTCGTTTACATATTTATCGGCAACTCGGACATTTCGCC
CCTGGATATATTCCACTTGACCCCAGTGCAGCTGCAGGTACTGCAAGTCAGCCGGTTTCCCCGTCTGATCAGCATTCTGG
TCGCGGGCATCAGTATGAGCGTGATTGGTCTGATTATGCAGCAGCTGACACGCAACCGGTTTGTTTCGCCTACAACAGCA
GGTACCATGGATTCCGCAAGGCTTGGGATTCTGGTGACTCTGATGTGGTTCCCTGGAGCGTCCTCTCTGCAAAAAATGCT
GGTTGCCTTCGCCTTTGCCCTGGCAGGTACGCTGATCTTTATGCGAATACTCGAGAAGGTCAAATTCAAGGACACGATCT
ACATCGCTCTTCTGGGCTTGATGTTCGGTAACATCGTTAGTTCGGTGACGACCTTTTTTGCTTACAAAAACGATTTGATC
CAAAACATATCCTCTTGGCTGCAGGGTGACTTCTCCACCATCATGAAGGGCCGATATGAATTGATCTATATCAGTATTCC
GCTGCTGATTATCGTCTATCTCTTCGCCAACCGTTTCACACTGGCGGGGATGGGAGAAGACTTCGCGACCAACCTGGGCC
TGGCATATCGAAGAGTGGTGAACCTCGGGTTGATTCTGGTAGCCATGGTCTCGGCTGTAGTCATTATCACCGTAGGAACC
ATTCCGTTTTTGGGTCTGGTCGTACCCAACATTGTGACGCTGTATAAGGGAGATAACTTGCGTGACACGCTGCCCCATAC
GGCCGTACTTGGAGCGATATTCGTTCTGGTCTGTGACATTCTGGGTCAATTGATTATTTATCCGTACCAGCTGTCCATCA
GTTTGACAGTGGGAGTCGTAGGCAGTGTGCTGTTTCTGTATTTACTGCTTCGAAGAAAGGCAAATGGGTCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.427

97.476

0.511

Multiple sequence alignment