Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNFU2_RS10825 Genome accession   NZ_CP182581
Coordinates   2458525..2459874 (+) Length   449 a.a.
NCBI ID   WP_172280513.1    Uniprot ID   -
Organism   Chryseobacterium sp. PTM-20240506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2453525..2464874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFU2_RS10805 (ACNFU2_10805) yidC 2453695..2455494 (-) 1800 WP_172280506.1 membrane protein insertase YidC -
  ACNFU2_RS10810 (ACNFU2_10810) - 2455688..2457295 (-) 1608 WP_273649467.1 CTP synthase -
  ACNFU2_RS10815 (ACNFU2_10815) - 2457423..2457992 (-) 570 WP_273649469.1 YceI family protein -
  ACNFU2_RS10820 (ACNFU2_10820) - 2458054..2458464 (-) 411 WP_273649470.1 hypothetical protein -
  ACNFU2_RS10825 (ACNFU2_10825) radA 2458525..2459874 (+) 1350 WP_172280513.1 DNA repair protein RadA Machinery gene
  ACNFU2_RS10830 (ACNFU2_10830) - 2460179..2461720 (+) 1542 WP_418121657.1 M12 family metallo-peptidase -
  ACNFU2_RS10835 (ACNFU2_10835) - 2461801..2462394 (+) 594 WP_273649472.1 ACP phosphodiesterase -
  ACNFU2_RS10840 (ACNFU2_10840) - 2462752..2462946 (-) 195 WP_273649473.1 hypothetical protein -
  ACNFU2_RS10845 (ACNFU2_10845) - 2463374..2463877 (-) 504 WP_306614157.1 DUF6702 family protein -
  ACNFU2_RS10850 (ACNFU2_10850) - 2463944..2464522 (+) 579 WP_172280522.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49866.48 Da        Isoelectric Point: 6.6124

>NTDB_id=1102321 ACNFU2_RS10825 WP_172280513.1 2458525..2459874(+) (radA) [Chryseobacterium sp. PTM-20240506]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKVSSRSLPSSKTKQHVINIIEVEAIEEPRIKTPSEELNRVM
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLSEVQNPNCFLYTETSLEKILHEAKKL
EPDFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQIEQRISEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1102321 ACNFU2_RS10825 WP_172280513.1 2458525..2459874(+) (radA) [Chryseobacterium sp. PTM-20240506]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAATACTCACAATGGATGGGTCAATGCAAAAACTG
CGGGCAATGGAATACATTAGTTGAAGAGGTCGTGGAAAAGGTATCCAGCAGAAGTCTTCCTTCCTCGAAAACAAAGCAAC
ACGTCATTAATATCATTGAAGTTGAAGCAATTGAAGAACCCAGGATTAAAACACCCTCCGAGGAGCTCAACCGGGTAATG
GGAGGTGGAATTGTTTTAGGTTCTGTTACTTTGATCGGAGGAGAGCCGGGAATCGGAAAATCGACATTGCTTTTACAGCT
GGCATTAAAAATGAAGAAGAAAATATTTTATGTTTCAGGAGAAGAAAGCGCCTCACAGATTAAAATGAGAGCAGACCGGT
TATCTGAAGTTCAAAACCCAAATTGCTTCCTTTACACCGAAACTTCACTGGAAAAAATATTACATGAAGCCAAAAAATTA
GAGCCTGATTTTATCATTATCGACTCCATTCAAACTTTACAGTCCCAATTGATAGAAAGCTCACCGGGAACCGTTTCCCA
AATCAGAGAATGTTCGAATGAGATCATTAAATATGCTAAAGAGAACAATACTCCAGTTTTTCTGGTAGGTCATATTACTA
AAGACGGACAGATTGCCGGTCCAAAGGTTTTGGAACATATGGTAGATGTAGTTTTAAATTTCGATGGGGATAGAAATCAT
CTTTTCAGATTATTACGGGCTAATAAAAACCGTTTTGGCTCCACCTCGGAAATTGGAATCTATGAAATGATTTCCCAGGG
TTTAAAAGAGATCAAAAATCCATCTGAAATTTTAATTACAAAAAAATTCGAGGAGCTTTCCGGAAACTCCGTAGCTGTAA
CGCTTGAGGGAAATCGCCCTATGTTATTGGAGATTCAGGCACTGGTAAGCACGGCTGTTTATGGAACACCTCAGAGGAGT
TCTACCGGATTTGATGCTAAAAGATTGAATATGTTGCTTGCCGTATTGGAGAAGAGAGCCGGATTTCAGCTTGGTGCTAA
AGACGTTTTTCTCAACATTACAGGAGGAATAAAGACAGATGACCCGGCCCTTGATCTCGCTGTAGTAGCCTCTATCCTTT
CATCTAATGAAGACATTGCAATATCCGAACATTTTTGTTTTGCCGGGGAAATCGGACTTAGCGGCGAAATCAGACCTGTT
GCTCAAATTGAACAACGCATCTCGGAAGCTGAAAAATTGGGATATGAAAAGATCTTTGTCTCCAACCTCAACAAAATACC
TAAAAGAAAATTCGGGATTAAAATTGAGGAAGTCAGTAAAATTGAAGATTTCCATGAACGAATCTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.908

100

0.499
  radA Streptococcus pneumoniae Rx1

48.908

100

0.499
  radA Streptococcus pneumoniae D39

48.908

100

0.499
  radA Streptococcus pneumoniae TIGR4

48.908

100

0.499
  radA Streptococcus mitis NCTC 12261

48.908

100

0.499
  radA Streptococcus mitis SK321

48.684

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.486

Multiple sequence alignment