Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACNFKI_RS14650 Genome accession   NZ_CP182571
Coordinates   2914288..2915040 (-) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus velezensis strain DY201     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2909288..2920040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS14625 (ACNFKI_14625) mreC 2909723..2910586 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  ACNFKI_RS14630 (ACNFKI_14630) mreB 2910617..2911630 (-) 1014 WP_418134006.1 cell shape-determining protein MreB -
  ACNFKI_RS14635 (ACNFKI_14635) radC 2911722..2912417 (-) 696 WP_003152646.1 RadC family protein -
  ACNFKI_RS14640 (ACNFKI_14640) - 2912449..2913018 (-) 570 WP_418134007.1 Maf family protein -
  ACNFKI_RS14645 (ACNFKI_14645) - 2913160..2914161 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  ACNFKI_RS14650 (ACNFKI_14650) comC 2914288..2915040 (-) 753 WP_044053500.1 prepilin peptidase Machinery gene
  ACNFKI_RS14655 (ACNFKI_14655) - 2915180..2916472 (-) 1293 WP_014305515.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACNFKI_RS14660 (ACNFKI_14660) - 2916531..2919173 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  ACNFKI_RS14665 (ACNFKI_14665) - 2919626..2919817 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=1102292 ACNFKI_RS14650 WP_044053500.1 2914288..2915040(-) (comC) [Bacillus velezensis strain DY201]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1102292 ACNFKI_RS14650 WP_044053500.1 2914288..2915040(-) (comC) [Bacillus velezensis strain DY201]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCT
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment