Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACNFKI_RS08290 Genome accession   NZ_CP182571
Coordinates   1593462..1594598 (-) Length   378 a.a.
NCBI ID   WP_342490356.1    Uniprot ID   -
Organism   Bacillus velezensis strain DY201     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1582197..1627487 1593462..1594598 within 0


Gene organization within MGE regions


Location: 1582197..1627487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS08205 (ACNFKI_08205) - 1582197..1583525 (+) 1329 WP_003154497.1 PhoH family protein -
  ACNFKI_RS08210 (ACNFKI_08210) - 1583520..1583996 (-) 477 WP_025851416.1 hypothetical protein -
  ACNFKI_RS08215 (ACNFKI_08215) - 1584100..1584387 (+) 288 Protein_1562 glutaminase -
  ACNFKI_RS08220 (ACNFKI_08220) - 1585105..1585608 (+) 504 WP_113792210.1 hypothetical protein -
  ACNFKI_RS08225 (ACNFKI_08225) - 1585627..1586046 (+) 420 WP_014305653.1 hypothetical protein -
  ACNFKI_RS08230 (ACNFKI_08230) - 1587038..1587271 (-) 234 WP_106503075.1 hypothetical protein -
  ACNFKI_RS08235 (ACNFKI_08235) - 1587466..1587861 (-) 396 WP_376910402.1 hypothetical protein -
  ACNFKI_RS08240 (ACNFKI_08240) - 1587851..1588216 (-) 366 WP_232489585.1 hypothetical protein -
  ACNFKI_RS08245 (ACNFKI_08245) - 1588365..1588766 (-) 402 WP_057079913.1 hypothetical protein -
  ACNFKI_RS08250 (ACNFKI_08250) - 1588903..1589139 (+) 237 WP_232489733.1 helix-turn-helix domain-containing protein -
  ACNFKI_RS08255 (ACNFKI_08255) - 1589265..1589546 (+) 282 WP_057079915.1 hypothetical protein -
  ACNFKI_RS08260 (ACNFKI_08260) - 1589599..1589844 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  ACNFKI_RS08265 (ACNFKI_08265) - 1590347..1591063 (+) 717 WP_322221253.1 hypothetical protein -
  ACNFKI_RS08270 (ACNFKI_08270) - 1591096..1591404 (-) 309 WP_376910408.1 hypothetical protein -
  ACNFKI_RS08275 (ACNFKI_08275) - 1591417..1592841 (-) 1425 WP_376910410.1 lipase -
  ACNFKI_RS08280 (ACNFKI_08280) - 1592891..1593256 (+) 366 WP_342490354.1 DUF1433 domain-containing protein -
  ACNFKI_RS08285 (ACNFKI_08285) - 1593299..1593472 (-) 174 WP_169061491.1 hypothetical protein -
  ACNFKI_RS08290 (ACNFKI_08290) rapC 1593462..1594598 (-) 1137 WP_342490356.1 aspartate phosphatase Regulator
  ACNFKI_RS08295 (ACNFKI_08295) - 1594780..1595610 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  ACNFKI_RS08300 (ACNFKI_08300) - 1595776..1596579 (-) 804 WP_376910413.1 SH3 domain-containing protein -
  ACNFKI_RS08305 (ACNFKI_08305) - 1596671..1599289 (-) 2619 WP_376910415.1 DUF7359 domain-containing protein -
  ACNFKI_RS08310 (ACNFKI_08310) - 1599362..1606192 (-) 6831 WP_418134603.1 phage tail tape measure protein -
  ACNFKI_RS08315 (ACNFKI_08315) - 1606935..1608068 (-) 1134 WP_127010388.1 GIY-YIG nuclease family protein -
  ACNFKI_RS08320 (ACNFKI_08320) - 1608243..1609121 (+) 879 WP_127010386.1 tyrosine-type recombinase/integrase -
  ACNFKI_RS08325 (ACNFKI_08325) - 1609207..1610700 (+) 1494 WP_418134604.1 hypothetical protein -
  ACNFKI_RS08330 (ACNFKI_08330) - 1610808..1610975 (-) 168 WP_014417681.1 hypothetical protein -
  ACNFKI_RS08335 (ACNFKI_08335) - 1611247..1611912 (+) 666 WP_057079926.1 hypothetical protein -
  ACNFKI_RS08340 (ACNFKI_08340) - 1611924..1612412 (-) 489 WP_057079927.1 hypothetical protein -
  ACNFKI_RS08345 (ACNFKI_08345) - 1612402..1612578 (-) 177 WP_057079928.1 XkdX family protein -
  ACNFKI_RS08350 (ACNFKI_08350) - 1612579..1612962 (-) 384 WP_057079929.1 hypothetical protein -
  ACNFKI_RS08355 (ACNFKI_08355) - 1612959..1614278 (-) 1320 WP_057079930.1 hypothetical protein -
  ACNFKI_RS08360 (ACNFKI_08360) - 1614317..1614886 (-) 570 WP_418134605.1 HNH endonuclease -
  ACNFKI_RS08365 (ACNFKI_08365) - 1614897..1615091 (-) 195 WP_259429615.1 helix-turn-helix domain-containing protein -
  ACNFKI_RS08370 (ACNFKI_08370) - 1615708..1618554 (-) 2847 WP_418134607.1 hypothetical protein -
  ACNFKI_RS08375 (ACNFKI_08375) - 1618572..1620476 (-) 1905 WP_418134608.1 hypothetical protein -
  ACNFKI_RS08380 (ACNFKI_08380) - 1620790..1621752 (+) 963 WP_334751186.1 AimR family lysis-lysogeny pheromone receptor -
  ACNFKI_RS08385 (ACNFKI_08385) - 1621796..1621918 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  ACNFKI_RS08390 (ACNFKI_08390) - 1622034..1622282 (+) 249 WP_418134610.1 hypothetical protein -
  ACNFKI_RS08395 (ACNFKI_08395) - 1622398..1623279 (+) 882 WP_418134611.1 hypothetical protein -
  ACNFKI_RS08400 (ACNFKI_08400) - 1623297..1623797 (+) 501 WP_418134612.1 hypothetical protein -
  ACNFKI_RS08405 (ACNFKI_08405) - 1623825..1624658 (+) 834 WP_418134614.1 glycosyl transferase family 2 -
  ACNFKI_RS08410 (ACNFKI_08410) - 1624865..1625227 (+) 363 WP_418134615.1 hypothetical protein -
  ACNFKI_RS08415 (ACNFKI_08415) - 1625778..1627487 (+) 1710 WP_418134616.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44671.95 Da        Isoelectric Point: 4.8741

>NTDB_id=1102270 ACNFKI_RS08290 WP_342490356.1 1593462..1594598(-) (rapC) [Bacillus velezensis strain DY201]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKATPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKVNKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1102270 ACNFKI_RS08290 WP_342490356.1 1593462..1594598(-) (rapC) [Bacillus velezensis strain DY201]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAGGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCATTCGTCATTGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAGGCTACCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAACGCTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-248)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.144

100

0.455

Multiple sequence alignment