Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACAK30_RS08890 | Genome accession | NZ_AP031579 |
| Coordinates | 1862710..1863090 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain JUNP406 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1857710..1868090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK30_RS08860 (JUNP406_1762) | kdsB | 1858613..1859374 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACAK30_RS08865 (JUNP406_1763) | - | 1859386..1860366 (+) | 981 | WP_004747384.1 | DNA polymerase III, delta' subunit | - |
| ACAK30_RS08870 (JUNP406_1764) | - | 1860378..1860719 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACAK30_RS08875 (JUNP406_1765) | - | 1860737..1861510 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| ACAK30_RS08880 (JUNP406_1766) | - | 1861548..1862156 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACAK30_RS08885 (JUNP406_1767) | - | 1862166..1862720 (+) | 555 | WP_000841371.1 | type II secretion system protein | - |
| ACAK30_RS08890 (JUNP406_1768) | xcpV | 1862710..1863090 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACAK30_RS08895 (JUNP406_1769) | xcpW | 1863090..1863791 (+) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACAK30_RS08900 (JUNP406_1770) | gspK | 1863791..1864750 (+) | 960 | WP_004747379.1 | type II secretion system minor pseudopilin GspK | - |
| ACAK30_RS08905 (JUNP406_1771) | - | 1864980..1865576 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ACAK30_RS08910 (JUNP406_1772) | ung | 1865627..1866340 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ACAK30_RS08915 (JUNP406_1773) | - | 1866337..1867461 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACAK30_RS08920 (JUNP406_1774) | tadA | 1867468..1867971 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=110224 ACAK30_RS08890 WP_000836911.1 1862710..1863090(+) (xcpV) [Acinetobacter baumannii strain JUNP406]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=110224 ACAK30_RS08890 WP_000836911.1 1862710..1863090(+) (xcpV) [Acinetobacter baumannii strain JUNP406]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |