Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACAK30_RS01395 Genome accession   NZ_AP031579
Coordinates   292041..292367 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain JUNP406     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 287041..297367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK30_RS01370 (JUNP406_0272) hemC 287658..288575 (+) 918 WP_188140200.1 hydroxymethylbilane synthase -
  ACAK30_RS01375 (JUNP406_0273) - 288580..289347 (+) 768 WP_004748520.1 uroporphyrinogen-III synthase -
  ACAK30_RS01380 (JUNP406_0274) - 289356..290195 (+) 840 WP_001230202.1 hypothetical protein -
  ACAK30_RS01385 (JUNP406_0275) - 290205..291398 (+) 1194 WP_000681777.1 hypothetical protein -
  ACAK30_RS01390 (JUNP406_0276) - 291406..291846 (+) 441 WP_000661569.1 thioesterase family protein -
  ACAK30_RS01395 (JUNP406_0277) hns 292041..292367 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACAK30_RS01400 (JUNP406_0278) gspN 292700..293443 (+) 744 WP_000730343.1 type II secretion system protein N -
  ACAK30_RS01405 (JUNP406_0279) - 293443..294279 (+) 837 WP_000870031.1 type II secretion system protein N -
  ACAK30_RS01410 (JUNP406_0280) gspD 294321..296597 (+) 2277 WP_004748516.1 type II secretion system secretin GspD -
  ACAK30_RS01415 (JUNP406_0281) - 296638..297267 (+) 630 WP_004748515.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=110207 ACAK30_RS01395 WP_000801427.1 292041..292367(+) (hns) [Acinetobacter baumannii strain JUNP406]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=110207 ACAK30_RS01395 WP_000801427.1 292041..292367(+) (hns) [Acinetobacter baumannii strain JUNP406]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment