Detailed information NTG1101827

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACNFKL_RS04460
• Genome accession: NZ_CP182515
• Coordinates: 914675..915901 (-)
• Length: 408 a.a.
• NCBI ID: WP_005015354.1
• Uniprot ID: A0A158M167
• Organism: Bordetella holmesii ATCC 51541 strain CDC F5101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 909675..920901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFKL_RS04440	phnC	910370..911140 (+)	771	WP_005015347.1	phosphonate ABC transporter ATP-binding protein	-
ACNFKL_RS04445	phnE	911128..912003 (+)	876	WP_005019899.1	phosphonate ABC transporter, permease protein PhnE	-
ACNFKL_RS04450	phnE	912000..912821 (+)	822	WP_005015351.1	phosphonate ABC transporter, permease protein PhnE	-
ACNFKL_RS04455	-	913018..914607 (+)	1590	WP_005015352.1	CYTH and CHAD domain-containing protein	-
ACNFKL_RS04460	pilA	914675..915901 (-)	1227	WP_005015354.1	signal recognition particle-docking protein FtsY	Machinery gene
ACNFKL_RS04465	rsmD	915974..916594 (+)	621	WP_026087870.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACNFKL_RS04470	coaD	916618..917130 (+)	513	WP_005015356.1	pantetheine-phosphate adenylyltransferase	-
ACNFKL_RS04475	-	917188..917442 (+)	255	WP_005015357.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ACNFKL_RS04480	-	917439..918650 (+)	1212	WP_005015358.1	benzoate/H(+) symporter BenE family transporter	-
ACNFKL_RS04485	-	918647..919030 (-)	384	WP_005015361.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 42070.54 Da
• Isoelectric Point: 7.4722

>NTDB_id=1101827 ACNFKL_RS04460 WP_005015354.1 914675..915901(-) (pilA) [Bordetella holmesii ATCC 51541 strain CDC F5101]
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD

Nucleotide

• Length: 1227 bp

>NTDB_id=1101827 ACNFKL_RS04460 WP_005015354.1 914675..915901(-) (pilA) [Bordetella holmesii ATCC 51541 strain CDC F5101]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (204-406)

• SRP54-type protein, helical bundle domain (SRP54_N) (122-183)

3D structure

• AlphaFold DB: A0A158M167

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.765	100	0.52