Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACNFKH_RS05405 Genome accession   NZ_CP182513
Coordinates   1039386..1040336 (+) Length   316 a.a.
NCBI ID   WP_418120951.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034386..1045336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS05390 - 1035234..1037165 (-) 1932 WP_052785346.1 hypothetical protein -
  ACNFKH_RS05395 - 1037241..1038515 (+) 1275 WP_041160150.1 DUF2972 domain-containing protein -
  ACNFKH_RS05400 - 1038479..1039327 (-) 849 WP_418120950.1 glycosyltransferase family 2 protein -
  ACNFKH_RS05405 waaF 1039386..1040336 (+) 951 WP_418120951.1 glycosyltransferase family 9 protein Regulator
  ACNFKH_RS05410 - 1040322..1041086 (-) 765 WP_418120952.1 glycosyltransferase family 25 protein -
  ACNFKH_RS05415 gmhA 1041086..1041646 (-) 561 WP_412689889.1 D-sedoheptulose 7-phosphate isomerase -
  ACNFKH_RS05420 rfaE1 1041643..1043028 (-) 1386 WP_418120953.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  ACNFKH_RS05425 rfaD 1043021..1043974 (-) 954 WP_002882954.1 ADP-glyceromanno-heptose 6-epimerase -
  ACNFKH_RS05430 gmhB 1043975..1044535 (-) 561 WP_002882953.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  ACNFKH_RS05435 - 1044617..1044919 (+) 303 WP_002852762.1 c-type cytochrome -
  ACNFKH_RS05440 ccoS 1044942..1045148 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.96 Da        Isoelectric Point: 10.3316

>NTDB_id=1101762 ACNFKH_RS05405 WP_418120951.1 1039386..1040336(+) (waaF) [Campylobacter jejuni strain AS-83-79]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1101762 ACNFKH_RS05405 WP_418120951.1 1039386..1040336(+) (waaF) [Campylobacter jejuni strain AS-83-79]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.675

99.367

0.921

Multiple sequence alignment