Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   ACNFKH_RS05075 Genome accession   NZ_CP182513
Coordinates   972657..973388 (+) Length   243 a.a.
NCBI ID   WP_002882606.1    Uniprot ID   A0A5Z0CCN3
Organism   Campylobacter jejuni strain AS-83-79     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 967657..978388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS05045 rpsF 967796..968173 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  ACNFKH_RS05050 ssb 968182..968736 (+) 555 WP_002882609.1 single-stranded DNA-binding protein -
  ACNFKH_RS05055 rpsR 968747..969007 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACNFKH_RS05060 lon 969068..971443 (-) 2376 WP_002866098.1 endopeptidase La -
  ACNFKH_RS05065 bamD 971460..972107 (-) 648 WP_002882608.1 outer membrane protein assembly factor BamD -
  ACNFKH_RS05070 fliW 972268..972657 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACNFKH_RS05075 proC 972657..973388 (+) 732 WP_002882606.1 pyrroline-5-carboxylate reductase Machinery gene
  ACNFKH_RS05080 ctsT 973385..973687 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  ACNFKH_RS05085 - 973684..974346 (+) 663 WP_002882605.1 hypothetical protein -
  ACNFKH_RS05090 - 974343..974795 (+) 453 WP_002859148.1 hypothetical protein -
  ACNFKH_RS05095 hemD 974792..975421 (-) 630 WP_002882604.1 uroporphyrinogen-III synthase -
  ACNFKH_RS05100 thiE 975399..976031 (-) 633 WP_002882603.1 thiamine phosphate synthase -
  ACNFKH_RS05105 thiD 976021..976833 (-) 813 WP_002882602.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNFKH_RS05110 - 976830..977516 (-) 687 WP_002882601.1 endonuclease III domain-containing protein -
  ACNFKH_RS05115 - 977513..978274 (-) 762 WP_002882600.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26506.91 Da        Isoelectric Point: 8.0980

>NTDB_id=1101759 ACNFKH_RS05075 WP_002882606.1 972657..973388(+) (proC) [Campylobacter jejuni strain AS-83-79]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQVLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTCSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1101759 ACNFKH_RS05075 WP_002882606.1 972657..973388(+) (proC) [Campylobacter jejuni strain AS-83-79]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCCTATGCTTTAGAAAATATTGCTCAAGTGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTCAGAATAATGCCCAATAC
AGCAGCTAAATATAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAGTTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGTTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GTGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z0CCN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

98.354

100

0.984

Multiple sequence alignment