Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNFKF_RS06965 Genome accession   NZ_CP182512
Coordinates   1281543..1282172 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain VTEC+     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1270465..1293346 1281543..1282172 within 0


Gene organization within MGE regions


Location: 1270465..1293346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKF_RS06905 - 1270465..1271484 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  ACNFKF_RS06910 yccA 1271892..1272551 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  ACNFKF_RS06915 tusE 1272642..1272971 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  ACNFKF_RS06920 yccX 1272968..1273246 (-) 279 WP_000048252.1 acylphosphatase -
  ACNFKF_RS06925 rlmI 1273341..1274531 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ACNFKF_RS06930 hspQ 1274589..1274906 (+) 318 WP_001295356.1 heat shock protein HspQ -
  ACNFKF_RS06935 yccU 1274951..1275364 (-) 414 WP_000665217.1 CoA-binding protein -
  ACNFKF_RS06940 csgI 1275537..1276199 (+) 663 WP_000847791.1 DUF2057 family protein -
  ACNFKF_RS06945 mgsA 1276295..1276753 (+) 459 WP_000424181.1 methylglyoxal synthase -
  ACNFKF_RS06950 helD 1276785..1278839 (-) 2055 WP_001301436.1 DNA helicase IV -
  ACNFKF_RS06955 yccF 1278962..1279408 (+) 447 WP_001261230.1 YccF domain-containing protein -
  ACNFKF_RS06960 yccS 1279418..1281580 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACNFKF_RS06965 sxy/tfoX 1281543..1282172 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNFKF_RS06970 sulA 1282391..1282900 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNFKF_RS06975 ompA 1283257..1284297 (+) 1041 WP_000750416.1 porin OmpA -
  ACNFKF_RS06980 matP 1284373..1284825 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNFKF_RS06985 ycbZ 1285011..1286771 (+) 1761 WP_000156526.1 AAA family ATPase -
  ACNFKF_RS06990 fabA 1286840..1287358 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ACNFKF_RS06995 rmf 1287428..1287595 (-) 168 WP_000828648.1 ribosome modulation factor -
  ACNFKF_RS07000 pqiC 1287851..1288414 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  ACNFKF_RS07005 pqiB 1288411..1290051 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  ACNFKF_RS07010 pqiA 1290056..1291309 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  ACNFKF_RS07015 uup 1291439..1293346 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=1101731 ACNFKF_RS06965 WP_000839159.1 1281543..1282172(-) (sxy/tfoX) [Escherichia coli strain VTEC+]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101731 ACNFKF_RS06965 WP_000839159.1 1281543..1282172(-) (sxy/tfoX) [Escherichia coli strain VTEC+]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment