Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACM1ND_RS22890 Genome accession   NZ_CP182500
Coordinates   5124193..5125146 (-) Length   317 a.a.
NCBI ID   WP_023990357.1    Uniprot ID   -
Organism   Paenibacillus sp. JJ1722     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5119193..5130146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1ND_RS22865 (ACM1ND_22865) - 5119539..5120450 (-) 912 WP_069080664.1 aldo/keto reductase -
  ACM1ND_RS22870 (ACM1ND_22870) - 5120731..5121474 (-) 744 WP_418026595.1 alpha/beta hydrolase -
  ACM1ND_RS22875 (ACM1ND_22875) - 5121508..5122488 (-) 981 WP_069080666.1 siderophore ABC transporter substrate-binding protein -
  ACM1ND_RS22880 (ACM1ND_22880) - 5122501..5123259 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  ACM1ND_RS22885 (ACM1ND_22885) - 5123253..5124203 (-) 951 WP_069080667.1 iron chelate uptake ABC transporter family permease subunit -
  ACM1ND_RS22890 (ACM1ND_22890) ceuB 5124193..5125146 (-) 954 WP_023990357.1 ABC transporter permease Machinery gene
  ACM1ND_RS22895 (ACM1ND_22895) - 5125475..5126152 (+) 678 WP_069080668.1 response regulator transcription factor -
  ACM1ND_RS22900 (ACM1ND_22900) - 5126149..5127066 (+) 918 WP_069080676.1 sensor histidine kinase -
  ACM1ND_RS22905 (ACM1ND_22905) - 5127175..5127852 (+) 678 WP_023990360.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=1101720 ACM1ND_RS22890 WP_023990357.1 5124193..5125146(-) (ceuB) [Paenibacillus sp. JJ1722]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1101720 ACM1ND_RS22890 WP_023990357.1 5124193..5125146(-) (ceuB) [Paenibacillus sp. JJ1722]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCAGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGAACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment