Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACM1ND_RS14860 Genome accession   NZ_CP182500
Coordinates   3368336..3368782 (-) Length   148 a.a.
NCBI ID   WP_418026209.1    Uniprot ID   -
Organism   Paenibacillus sp. JJ1722     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3363336..3373782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1ND_RS14815 (ACM1ND_14815) - 3363734..3363946 (+) 213 WP_418026202.1 helix-turn-helix domain-containing protein -
  ACM1ND_RS14820 (ACM1ND_14820) - 3364266..3364661 (-) 396 WP_418026203.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  ACM1ND_RS14825 (ACM1ND_14825) - 3364676..3364822 (-) 147 WP_153794850.1 cyclic lactone autoinducer peptide -
  ACM1ND_RS14830 (ACM1ND_14830) - 3364800..3365354 (-) 555 WP_418026204.1 accessory gene regulator ArgB-like protein -
  ACM1ND_RS14835 (ACM1ND_14835) - 3365332..3365964 (-) 633 WP_418026205.1 hypothetical protein -
  ACM1ND_RS14840 (ACM1ND_14840) - 3366089..3366421 (-) 333 WP_418026206.1 YolD-like family protein -
  ACM1ND_RS14845 (ACM1ND_14845) - 3366580..3366927 (+) 348 WP_152381849.1 hypothetical protein -
  ACM1ND_RS14850 (ACM1ND_14850) - 3367033..3367932 (-) 900 WP_418026207.1 hypothetical protein -
  ACM1ND_RS14855 (ACM1ND_14855) - 3368076..3368276 (-) 201 WP_418026208.1 hypothetical protein -
  ACM1ND_RS14860 (ACM1ND_14860) nucA/comI 3368336..3368782 (-) 447 WP_418026209.1 nuclease Machinery gene
  ACM1ND_RS14865 (ACM1ND_14865) - 3369191..3369655 (+) 465 WP_418026210.1 hypothetical protein -
  ACM1ND_RS14870 (ACM1ND_14870) - 3370109..3370669 (-) 561 WP_418026211.1 phage holin, LLH family -
  ACM1ND_RS14875 (ACM1ND_14875) - 3370672..3371667 (-) 996 WP_418026212.1 GH25 family lysozyme -
  ACM1ND_RS14880 (ACM1ND_14880) - 3371645..3372148 (-) 504 WP_061829384.1 phage holin family protein -
  ACM1ND_RS14885 (ACM1ND_14885) - 3372123..3372344 (-) 222 WP_418026213.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16250.53 Da        Isoelectric Point: 7.2152

>NTDB_id=1101709 ACM1ND_RS14860 WP_418026209.1 3368336..3368782(-) (nucA/comI) [Paenibacillus sp. JJ1722]
MFRWIFTVLITVLLAGCSVQQDVVKTTKSDPVAVPVTQVSADTIKLEFPSDRYPETARHIKEAIASGKSPVCTIDREGAD
HNRDLSLKGVPTKKGKDRDEWPMAMCSEGGEGANIKYISPKDNRGAGSWVGHKLDEYADGTKVEFIVK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1101709 ACM1ND_RS14860 WP_418026209.1 3368336..3368782(-) (nucA/comI) [Paenibacillus sp. JJ1722]
ATGTTTAGATGGATATTTACCGTGTTGATAACAGTCCTATTAGCTGGATGCAGTGTACAACAAGACGTTGTAAAGACCAC
TAAGAGCGACCCTGTAGCCGTTCCAGTAACACAGGTATCGGCAGACACGATTAAGCTGGAGTTTCCGTCAGATCGCTATC
CCGAGACAGCCCGGCACATAAAAGAGGCTATAGCATCCGGGAAGTCACCAGTATGCACCATAGACCGCGAAGGAGCCGAC
CATAACCGTGACCTGTCCCTAAAGGGTGTACCCACAAAGAAGGGCAAGGATCGCGACGAGTGGCCTATGGCTATGTGCTC
AGAAGGTGGAGAGGGTGCAAATATAAAGTACATAAGCCCGAAGGATAACCGTGGAGCTGGATCGTGGGTAGGGCACAAGC
TGGATGAATATGCAGACGGAACAAAAGTTGAATTTATCGTTAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.874

69.595

0.493

Multiple sequence alignment