Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACNJYK_RS29355 Genome accession   NZ_CP182417
Coordinates   6444564..6446180 (-) Length   538 a.a.
NCBI ID   WP_016450698.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain Dt1S33     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6439564..6451180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYK_RS29340 (ACNJYK_29340) - 6440161..6441006 (-) 846 WP_026062793.1 hypothetical protein -
  ACNJYK_RS29345 (ACNJYK_29345) - 6441080..6442219 (-) 1140 WP_013804750.1 slipin family protein -
  ACNJYK_RS29350 (ACNJYK_29350) rtcR 6442917..6444542 (+) 1626 WP_017406981.1 RNA repair transcriptional activator RtcR -
  ACNJYK_RS29355 (ACNJYK_29355) rpoN/rpoN1 6444564..6446180 (-) 1617 WP_016450698.1 RNA polymerase factor sigma-54 Machinery gene
  ACNJYK_RS29360 (ACNJYK_29360) lptB 6446235..6447032 (-) 798 WP_416820373.1 LPS export ABC transporter ATP-binding protein -
  ACNJYK_RS29365 (ACNJYK_29365) lptA 6447029..6447691 (-) 663 WP_046987249.1 lipopolysaccharide transport periplasmic protein LptA -
  ACNJYK_RS29370 (ACNJYK_29370) - 6447864..6448514 (-) 651 WP_016450695.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACNJYK_RS29375 (ACNJYK_29375) - 6448596..6449285 (-) 690 WP_016454601.1 SPOR domain-containing protein -
  ACNJYK_RS29380 (ACNJYK_29380) argS 6449306..6451003 (-) 1698 WP_016450693.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59239.28 Da        Isoelectric Point: 4.5784

>NTDB_id=1101578 ACNJYK_RS29355 WP_016450698.1 6444564..6446180(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain Dt1S33]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANDDGDHEAASSAPEPAAPGADAADSFQESR
ADQPSAAVEWEAPSDTSSGDAAETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGDDDETDATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGDGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREAMVLIARLEPRPGRR
FADVQRQIVVPDVIVRPVRMGAGRMEFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=1101578 ACNJYK_RS29355 WP_016450698.1 6444564..6446180(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain Dt1S33]
TTGAAGCCCGGACTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACCCCGCAACTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGACGACG
GCGACCACGAAGCGGCAAGCAGCGCCCCGGAGCCTGCGGCGCCCGGCGCCGACGCCGCGGACTCCTTCCAGGAAAGCCGT
GCGGACCAGCCATCGGCTGCGGTGGAATGGGAGGCGCCGTCGGACACATCCTCCGGCGATGCCGCCGAGACCTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGATGGCCAGACCAACTCGGGCAACGACGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGCGGCCAGGGTGACGATGACGAGACCGATGCCACCGAGCTGGCACGCAGCGCAGAAAGCCTGACCGAC
CACCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGATCGTGCCGCGCTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAGGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGACCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGTTGCAAAGCCTGGAGCCGGTGGGTGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAGCTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCGACGGCAGTGCCGAGGACGAGGATCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGTGACCTGCGCAAGCTCGCCA
GCCTGTGCGGCGCGCGCGAGGAGCGGCTGCGCGAGGCGATGGTCCTGATCGCCCGGCTGGAGCCGCGCCCGGGCCGGCGC
TTCGCCGACGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTGCGCCCCGTGCGCATGGGTGCGGGACGCATGGAGTT
CAGCGTGCAACTCAACCCCGATGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGGCTGGGCACCGAGGCGGGCGGCAACGCGTCGAGCACG
GCCGTGCGCGCGCTCATCAAGCAGTTCGTCGCAGCCGAGGACCCCAGGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCACGGCGCACCGTGGCCAAGTACCGCGAACTGCTCAAGATCCCCCCGACCACGC
TGCGCAAGGCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515

Multiple sequence alignment