Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNJYK_RS01555 Genome accession   NZ_CP182417
Coordinates   348817..350202 (+) Length   461 a.a.
NCBI ID   WP_279493954.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain Dt1S33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343817..355202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYK_RS01530 (ACNJYK_01530) lplT 344637..345938 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  ACNJYK_RS01535 (ACNJYK_01535) alr 346073..347176 (+) 1104 WP_209803097.1 alanine racemase -
  ACNJYK_RS01540 (ACNJYK_01540) - 347177..347617 (-) 441 WP_016448589.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACNJYK_RS01545 (ACNJYK_01545) - 347714..348529 (+) 816 WP_017407487.1 siderophore-interacting protein -
  ACNJYK_RS01555 (ACNJYK_01555) radA 348817..350202 (+) 1386 WP_279493954.1 DNA repair protein RadA Machinery gene
  ACNJYK_RS01560 (ACNJYK_01560) - 350286..350732 (+) 447 WP_016448586.1 hypothetical protein -
  ACNJYK_RS01565 (ACNJYK_01565) - 350777..351715 (+) 939 WP_016448585.1 branched-chain amino acid transaminase -
  ACNJYK_RS01570 (ACNJYK_01570) - 351837..352046 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  ACNJYK_RS01575 (ACNJYK_01575) - 352078..352938 (-) 861 WP_061288639.1 glycosyltransferase family 32 protein -
  ACNJYK_RS01580 (ACNJYK_01580) - 353069..354337 (+) 1269 WP_047468084.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48099.71 Da        Isoelectric Point: 7.6673

>NTDB_id=1101559 ACNJYK_RS01555 WP_279493954.1 348817..350202(+) (radA) [Delftia tsuruhatensis strain Dt1S33]
MAKDKTMFICSACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1101559 ACNJYK_RS01555 WP_279493954.1 348817..350202(+) (radA) [Delftia tsuruhatensis strain Dt1S33]
ATGGCCAAAGACAAAACCATGTTCATCTGCAGTGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATTGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAACGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCTTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAACGCCGTGGGCGGCGTACGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATCCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.149

98.915

0.466
  radA Streptococcus pneumoniae D39

47.964

95.879

0.46
  radA Streptococcus pneumoniae TIGR4

47.964

95.879

0.46
  radA Streptococcus pneumoniae R6

47.964

95.879

0.46
  radA Streptococcus pneumoniae Rx1

47.964

95.879

0.46
  radA Streptococcus mitis SK321

48.73

93.926

0.458

Multiple sequence alignment