Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACM2UG_RS14410 Genome accession   NZ_CP182398
Coordinates   2900619..2901248 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2895619..2906248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2UG_RS14395 (ACM2UG_14395) helD 2895861..2897915 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACM2UG_RS14400 (ACM2UG_14400) yccF 2898038..2898484 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACM2UG_RS14405 (ACM2UG_14405) yccS 2898494..2900656 (+) 2163 WP_148725963.1 YccS family putative transporter -
  ACM2UG_RS14410 (ACM2UG_14410) sxy/tfoX 2900619..2901248 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACM2UG_RS14415 (ACM2UG_14415) sulA 2901467..2901976 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ACM2UG_RS14420 (ACM2UG_14420) ompA 2902333..2903373 (+) 1041 WP_000750416.1 porin OmpA -
  ACM2UG_RS14425 (ACM2UG_14425) matP 2903449..2903901 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACM2UG_RS14430 (ACM2UG_14430) ycbZ 2904087..2905847 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101522 ACM2UG_RS14410 WP_000839153.1 2900619..2901248(-) (sxy/tfoX) [Escherichia coli strain EC6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101522 ACM2UG_RS14410 WP_000839153.1 2900619..2901248(-) (sxy/tfoX) [Escherichia coli strain EC6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment