Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJZ6_RS09210 Genome accession   NZ_CP182387
Coordinates   1841389..1842018 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Br_190_kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836389..1847018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ6_RS09190 ycbZ 1836779..1838539 (-) 1761 WP_000156526.1 AAA family ATPase -
  ACNJZ6_RS09195 matP 1838725..1839177 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACNJZ6_RS09200 ompA 1839252..1840304 (-) 1053 WP_000750419.1 porin OmpA -
  ACNJZ6_RS09205 sulA 1840661..1841170 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNJZ6_RS09210 sxy/tfoX 1841389..1842018 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJZ6_RS09215 yccS 1841981..1844143 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ACNJZ6_RS09220 yccF 1844153..1844599 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJZ6_RS09225 helD 1844722..1846776 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101496 ACNJZ6_RS09210 WP_000839153.1 1841389..1842018(+) (sxy/tfoX) [Escherichia coli strain Br_190_kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101496 ACNJZ6_RS09210 WP_000839153.1 1841389..1842018(+) (sxy/tfoX) [Escherichia coli strain Br_190_kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment