Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJZ3_RS14595 Genome accession   NZ_CP182383
Coordinates   2984785..2985414 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Br_178_kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2979785..2990414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ3_RS14580 helD 2980027..2982081 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACNJZ3_RS14585 yccF 2982204..2982650 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJZ3_RS14590 yccS 2982660..2984822 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACNJZ3_RS14595 sxy/tfoX 2984785..2985414 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJZ3_RS14600 sulA 2985633..2986142 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNJZ3_RS14605 ompA 2986499..2987539 (+) 1041 WP_000750416.1 porin OmpA -
  ACNJZ3_RS14610 matP 2987615..2988067 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNJZ3_RS14615 ycbZ 2988253..2990013 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101477 ACNJZ3_RS14595 WP_000839153.1 2984785..2985414(-) (sxy/tfoX) [Escherichia coli strain Br_178_kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101477 ACNJZ3_RS14595 WP_000839153.1 2984785..2985414(-) (sxy/tfoX) [Escherichia coli strain Br_178_kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment