Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJZ7_RS15530 Genome accession   NZ_CP182378
Coordinates   3184638..3185267 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Br_167_kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179638..3190267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ7_RS15515 helD 3179880..3181934 (-) 2055 WP_021561301.1 DNA helicase IV -
  ACNJZ7_RS15520 yccF 3182057..3182503 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJZ7_RS15525 yccS 3182513..3184675 (+) 2163 WP_001550920.1 YccS family putative transporter -
  ACNJZ7_RS15530 sxy/tfoX 3184638..3185267 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJZ7_RS15535 sulA 3185486..3185995 (+) 510 WP_416853838.1 SOS-induced cell division inhibitor SulA -
  ACNJZ7_RS15540 ompA 3186352..3187404 (+) 1053 WP_000750418.1 porin OmpA -
  ACNJZ7_RS15545 matP 3187479..3187931 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNJZ7_RS15550 ycbZ 3188117..3189877 (+) 1761 WP_115725932.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101455 ACNJZ7_RS15530 WP_000839153.1 3184638..3185267(-) (sxy/tfoX) [Escherichia coli strain Br_167_kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101455 ACNJZ7_RS15530 WP_000839153.1 3184638..3185267(-) (sxy/tfoX) [Escherichia coli strain Br_167_kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment