Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJZ8_RS11000 Genome accession   NZ_CP182374
Coordinates   2318136..2318765 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain bR_120_Kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313136..2323765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ8_RS10980 ycbZ 2313538..2315298 (-) 1761 WP_000156526.1 AAA family ATPase -
  ACNJZ8_RS10985 matP 2315484..2315936 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACNJZ8_RS10990 ompA 2316011..2317051 (-) 1041 WP_000750416.1 porin OmpA -
  ACNJZ8_RS10995 sulA 2317408..2317917 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNJZ8_RS11000 sxy/tfoX 2318136..2318765 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJZ8_RS11005 yccS 2318728..2320890 (-) 2163 WP_000875015.1 YccS family putative transporter -
  ACNJZ8_RS11010 yccF 2320900..2321346 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJZ8_RS11015 helD 2321469..2323523 (+) 2055 WP_001352492.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101430 ACNJZ8_RS11000 WP_000839153.1 2318136..2318765(+) (sxy/tfoX) [Escherichia coli strain bR_120_Kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101430 ACNJZ8_RS11000 WP_000839153.1 2318136..2318765(+) (sxy/tfoX) [Escherichia coli strain bR_120_Kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment