Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJZ5_RS13250 Genome accession   NZ_CP182371
Coordinates   2759205..2759834 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Br_112_kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754205..2764834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ5_RS13230 ycbZ 2754595..2756355 (-) 1761 WP_000156479.1 AAA family ATPase -
  ACNJZ5_RS13235 matP 2756541..2756993 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNJZ5_RS13240 ompA 2757068..2758120 (-) 1053 WP_000750418.1 porin OmpA -
  ACNJZ5_RS13245 sulA 2758477..2758986 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ACNJZ5_RS13250 sxy/tfoX 2759205..2759834 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJZ5_RS13255 yccS 2759797..2761959 (-) 2163 WP_001550920.1 YccS family putative transporter -
  ACNJZ5_RS13260 yccF 2761969..2762415 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJZ5_RS13265 helD 2762538..2764592 (+) 2055 WP_021561301.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101414 ACNJZ5_RS13250 WP_000839153.1 2759205..2759834(+) (sxy/tfoX) [Escherichia coli strain Br_112_kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101414 ACNJZ5_RS13250 WP_000839153.1 2759205..2759834(+) (sxy/tfoX) [Escherichia coli strain Br_112_kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment