Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJ0B_RS14875 Genome accession   NZ_CP182365
Coordinates   3013136..3013765 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain Br_54_kylling     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3008136..3018765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJ0B_RS14860 helD 3008378..3010432 (-) 2055 WP_001295938.1 DNA helicase IV -
  ACNJ0B_RS14865 yccF 3010555..3011001 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJ0B_RS14870 yccS 3011011..3013173 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACNJ0B_RS14875 sxy/tfoX 3013136..3013765 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJ0B_RS14880 sulA 3013984..3014493 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ACNJ0B_RS14885 ompA 3014849..3015901 (+) 1053 WP_001346420.1 porin OmpA -
  ACNJ0B_RS14890 matP 3015977..3016429 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ACNJ0B_RS14895 ycbZ 3016615..3018375 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1101388 ACNJ0B_RS14875 WP_000839151.1 3013136..3013765(-) (sxy/tfoX) [Escherichia coli strain Br_54_kylling]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101388 ACNJ0B_RS14875 WP_000839151.1 3013136..3013765(-) (sxy/tfoX) [Escherichia coli strain Br_54_kylling]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment