Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNI24_RS06820 Genome accession   NZ_CP182355
Coordinates   1365879..1367228 (-) Length   449 a.a.
NCBI ID   WP_129089603.1    Uniprot ID   A0A4Q1AJW8
Organism   MAG: Halarcobacter sp. isolate PCE-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360879..1372228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI24_RS06790 (ACNI24_06790) - 1362188..1362841 (-) 654 WP_129083240.1 ferritin family protein -
  ACNI24_RS06795 (ACNI24_06795) - 1362935..1363372 (-) 438 WP_419773431.1 Dps family protein -
  ACNI24_RS06800 (ACNI24_06800) - 1363572..1363973 (+) 402 WP_417327770.1 Fur family transcriptional regulator -
  ACNI24_RS06805 (ACNI24_06805) - 1363986..1364903 (-) 918 WP_419773432.1 calcium/sodium antiporter -
  ACNI24_RS06810 (ACNI24_06810) ybeY 1364904..1365323 (-) 420 WP_419773433.1 rRNA maturation RNase YbeY -
  ACNI24_RS06815 (ACNI24_06815) - 1365437..1365841 (+) 405 WP_419773434.1 thioesterase family protein -
  ACNI24_RS06820 (ACNI24_06820) radA 1365879..1367228 (-) 1350 WP_129089603.1 DNA repair protein RadA Machinery gene
  ACNI24_RS06825 (ACNI24_06825) - 1367649..1369391 (+) 1743 Protein_1326 methyl-accepting chemotaxis protein -
  ACNI24_RS06830 (ACNI24_06830) - 1369476..1370603 (+) 1128 WP_419773435.1 DUF3095 domain-containing protein -
  ACNI24_RS06835 (ACNI24_06835) - 1370600..1371157 (+) 558 WP_129089599.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACNI24_RS06840 (ACNI24_06840) - 1371167..1371580 (+) 414 WP_129083250.1 PACE efflux transporter -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49238.69 Da        Isoelectric Point: 6.1952

>NTDB_id=1101363 ACNI24_RS06820 WP_129089603.1 1365879..1367228(-) (radA) [MAG: Halarcobacter sp. isolate PCE-3]
MAKKKTSLFECQACGEQSTKWLGKCPNCGSWDSFMELNQEQQEVLKQTSKVINTSSKATPITDIKQDDVVRFSSNNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIAASGKKVLYVSGEESSGQIKLRANRLDANHKELFLLSEIKLEEIQD
ELLRQNYDVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASKELRMLRGFKNRFGSTSEIGIFEMTQEGLISAKDIASKFFDKTKAQAGSALTVTMEGTRALIIEVQALVTESTYPN
PKRSATGFDANRLNMLLALLEKKIDLPLNHYDVFINVSGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLREAQAQGIKKAVVAQKPNLKLDLKVFPVDEVPKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1101363 ACNI24_RS06820 WP_129089603.1 1365879..1367228(-) (radA) [MAG: Halarcobacter sp. isolate PCE-3]
ATGGCAAAAAAGAAAACATCACTTTTTGAGTGTCAAGCATGTGGAGAACAAAGTACAAAGTGGCTTGGTAAATGCCCTAA
CTGTGGCTCTTGGGATAGTTTTATGGAATTAAACCAAGAACAACAAGAAGTTTTAAAACAAACTTCTAAAGTCATAAATA
CAAGTTCTAAAGCAACTCCTATTACAGATATTAAACAAGATGATGTTGTAAGATTTTCTTCAAATAACGATGAATTTGAC
TTAGTTTTAGGTGGAGGAATAGTTCCAGGAAGTTTAACTTTAATTGGAGGAAGTCCTGGAGTTGGAAAATCTACACTGTT
ACTAAAAGTGGCAGGTTCTATTGCAGCAAGTGGTAAAAAAGTTTTGTACGTTTCAGGAGAAGAGAGTTCAGGACAAATAA
AACTTCGTGCAAATAGATTAGATGCAAATCATAAAGAGCTATTTTTATTAAGTGAAATTAAACTTGAAGAGATACAAGAT
GAACTATTAAGACAAAATTATGATGTAGTAATTATTGATTCAATTCAGACAATTTACTCTTCAAACCTAACAAGTGCACC
AGGAAGTGTTTCGCAAGTTAGAGAAATCACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCTGATATTGCTATGTTTATTA
TTGGACACATTACAAAAGATGGTTCTATTGCAGGACCAAGAGTTTTAGAACATATGGTTGATACTGTTTTATATTTTGAA
GGTGAAGCAAGTAAAGAGTTACGTATGTTAAGAGGCTTTAAAAATAGATTTGGTTCAACCTCTGAAATAGGTATTTTCGA
AATGACACAAGAGGGACTAATCTCAGCAAAAGATATTGCTTCAAAGTTCTTTGATAAAACAAAAGCACAAGCAGGTTCAG
CCTTAACTGTAACCATGGAAGGAACAAGAGCCTTAATCATAGAAGTCCAAGCTTTAGTTACTGAAAGTACTTATCCAAAC
CCTAAAAGAAGTGCTACAGGATTTGATGCAAATAGATTAAATATGCTTCTAGCCTTACTTGAAAAGAAAATTGATTTACC
ATTAAATCACTATGATGTTTTTATAAACGTTTCTGGTGGAATAAAAATCAAAGAGAGTTCTGCTGATTTAGCTGTAATTG
CAGCTATTATCTCTTCTTTTAGAGATAGACCTATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAG
ATTAAAGATGTATATTCTATTGATTTAAGACTAAGAGAAGCTCAAGCTCAAGGTATTAAAAAAGCAGTAGTTGCACAAAA
ACCAAATTTAAAACTTGATTTAAAAGTTTTCCCAGTAGATGAAGTTCCTAAAATGATAGAATTATTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1AJW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.541

97.105

0.481
  radA Streptococcus pneumoniae Rx1

49.184

95.546

0.47
  radA Streptococcus pneumoniae D39

49.184

95.546

0.47
  radA Streptococcus pneumoniae R6

49.184

95.546

0.47
  radA Streptococcus pneumoniae TIGR4

49.184

95.546

0.47
  radA Streptococcus mitis NCTC 12261

49.184

95.546

0.47
  radA Streptococcus mitis SK321

49.184

95.546

0.47

Multiple sequence alignment