Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNI3F_RS04800 Genome accession   NZ_CP182351
Coordinates   951881..953713 (-) Length   610 a.a.
NCBI ID   WP_419777649.1    Uniprot ID   -
Organism   MAG: Malaciobacter marinus isolate FB10N2-2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946881..958713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI3F_RS04775 (ACNI3F_04775) - 946977..948734 (+) 1758 WP_099312594.1 YgiQ family radical SAM protein -
  ACNI3F_RS04780 (ACNI3F_04780) - 948816..949385 (+) 570 WP_099312596.1 adenylate kinase -
  ACNI3F_RS04785 (ACNI3F_04785) - 949401..950180 (+) 780 WP_228150859.1 competence/damage-inducible protein A -
  ACNI3F_RS04790 (ACNI3F_04790) - 950183..950851 (-) 669 WP_419777648.1 tetratricopeptide repeat protein -
  ACNI3F_RS04795 (ACNI3F_04795) - 950848..951870 (-) 1023 WP_099312600.1 alanine racemase -
  ACNI3F_RS04800 (ACNI3F_04800) uvrC 951881..953713 (-) 1833 WP_419777649.1 excinuclease ABC subunit UvrC Machinery gene
  ACNI3F_RS04805 (ACNI3F_04805) - 953750..954658 (-) 909 WP_419777650.1 hypothetical protein -
  ACNI3F_RS04810 (ACNI3F_04810) - 954757..955449 (-) 693 WP_419777651.1 choline/ethanolamine kinase family protein -
  ACNI3F_RS04815 (ACNI3F_04815) pnuC 955508..956116 (-) 609 WP_419777936.1 nicotinamide riboside transporter PnuC -
  ACNI3F_RS04820 (ACNI3F_04820) - 956235..956513 (+) 279 WP_099312575.1 putative quinol monooxygenase -
  ACNI3F_RS04825 (ACNI3F_04825) - 956524..957159 (+) 636 WP_099312574.1 hypothetical protein -
  ACNI3F_RS04830 (ACNI3F_04830) - 957156..957656 (-) 501 WP_099312572.1 SprT-like domain-containing protein -
  ACNI3F_RS04835 (ACNI3F_04835) - 957660..958127 (-) 468 WP_099312570.1 J domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71373.90 Da        Isoelectric Point: 9.4996

>NTDB_id=1101342 ACNI3F_RS04800 WP_419777649.1 951881..953713(-) (uvrC) [MAG: Malaciobacter marinus isolate FB10N2-2]
MNLEEKLKELPNSAGVYQYFNKDGHLLYIGKAKVLKNRVKSYFKFTPNLAPADKLSPRIYKMITEVKSLEWIIAPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYKEDFPRLEITRKVLKDKNIKYFGPYSTGARDMLDSIYEIIPLVQKKSC
IKGKEACLFHQIKKCYAPCVGKISKEEYSKIVDEALEYIYNKNKLIKKLNERMLQYSEEFRFEEAMKIRDRIKTIEKSQI
HTGMDLASNDNLDLFAIKASKEKAVIVRMFFRDGKLASSNHDYLKINQKELDIDLNEAYKRAIINYYDNEIPLLPKEIVV
ADEIIQEIEELQEFIKDRFEKNIPIIHPKRGKKTQIIKIAINNCNELLRLQNSNATTIYKQLQELLNLSYTPNRFECFDN
SHMMGQATVGAMITWEEKFIKADYRHYNLEAKDEYAQMKETLIRRVQSFEKNPAPDVWVIDGGETLLKLAIDIRNSVGVN
LDIIAIAKEKLDFKAHRAKGSAKDIIYFEENSNIKRVDLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKDDSKISLLQI
KGIGEAKVKKLLLYFGEFEKIKNASFDELKIVLNEKDASLLINYFKTLDN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1101342 ACNI3F_RS04800 WP_419777649.1 951881..953713(-) (uvrC) [MAG: Malaciobacter marinus isolate FB10N2-2]
ATGAACTTAGAAGAAAAACTTAAAGAATTACCAAATAGTGCTGGTGTTTATCAGTACTTTAATAAAGATGGACACTTACT
TTATATAGGAAAAGCAAAAGTACTAAAAAATAGAGTCAAATCATATTTTAAATTTACTCCTAATTTAGCACCTGCTGATA
AATTAAGTCCTAGAATTTACAAAATGATAACAGAAGTGAAATCTTTAGAGTGGATTATTGCACCAAATGAACATGATGCA
CTTATACTTGAAAATTCACTTATTAAACAACTTAAACCAAAATACAATATTTTATTAAGAGATGATAAAACATATCCTTA
TATTGTTATTGATTATAAAGAAGATTTTCCAAGATTAGAAATAACAAGAAAAGTATTAAAAGATAAAAATATTAAATACT
TTGGTCCATATTCCACTGGTGCTAGAGATATGCTTGATAGTATTTATGAAATAATTCCTTTAGTACAAAAAAAATCTTGT
ATTAAAGGAAAAGAAGCTTGTCTTTTTCATCAAATAAAAAAGTGTTATGCTCCTTGTGTTGGAAAAATTTCAAAAGAAGA
GTATAGTAAAATAGTTGATGAAGCCTTAGAATATATATACAATAAAAATAAGTTAATTAAAAAATTAAATGAAAGAATGC
TTCAATACTCAGAAGAGTTTAGATTTGAAGAAGCTATGAAAATTAGAGATAGAATTAAAACAATTGAAAAATCTCAAATC
CATACAGGAATGGATTTAGCAAGTAATGATAATCTAGATTTATTTGCAATAAAAGCATCTAAAGAAAAAGCCGTAATAGT
AAGAATGTTTTTTAGAGATGGTAAGTTAGCTTCAAGTAACCATGACTATTTAAAAATAAATCAAAAAGAGCTAGACATAG
ACCTAAATGAAGCATATAAAAGAGCAATAATTAACTATTATGACAATGAAATTCCTTTACTACCAAAAGAGATAGTTGTA
GCTGATGAGATAATACAAGAAATTGAAGAACTTCAAGAGTTTATAAAAGATAGATTTGAAAAAAATATCCCAATCATTCA
TCCAAAAAGAGGGAAGAAAACACAAATTATAAAAATTGCAATAAATAACTGTAATGAGCTTTTAAGACTTCAAAATAGTA
ATGCAACTACTATTTATAAACAACTACAAGAGTTATTAAACCTTTCATATACACCAAATAGATTTGAATGCTTTGATAAC
TCACATATGATGGGTCAAGCAACAGTTGGTGCAATGATTACTTGGGAAGAGAAGTTTATAAAAGCAGATTATAGACATTA
TAATCTTGAAGCAAAAGATGAATATGCACAAATGAAAGAAACACTAATAAGAAGAGTACAAAGTTTTGAAAAAAATCCAG
CTCCTGATGTTTGGGTTATTGATGGAGGAGAAACTTTATTAAAACTTGCTATTGATATAAGAAACTCTGTGGGAGTAAAT
CTTGATATAATTGCAATTGCAAAAGAAAAACTTGATTTTAAAGCACATAGAGCAAAAGGAAGTGCAAAAGATATAATCTA
TTTTGAAGAAAATAGTAATATAAAAAGAGTTGATTTACTTCCAAGTGATAAAAGATTACAATTTATTCAAAGACTAAGAG
ATGAAGCACATAGATTTGCAATCTCTTTTCATAAAAAACAAAAAAGAAAAGATGATAGTAAAATATCTTTACTTCAAATA
AAAGGAATTGGTGAAGCTAAAGTCAAAAAACTTCTTTTATATTTTGGAGAATTTGAAAAAATAAAAAATGCATCTTTTGA
TGAACTAAAAATTGTTTTAAATGAAAAGGATGCTTCATTATTAATAAACTATTTTAAAACATTAGATAACTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.003

98.033

0.5

Multiple sequence alignment