Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNI28_RS11490 Genome accession   NZ_CP182350
Coordinates   2280265..2282097 (-) Length   610 a.a.
NCBI ID   WP_419766474.1    Uniprot ID   -
Organism   MAG: Arcobacter sp. isolate LRMN1-1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275265..2287097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI28_RS11465 (ACNI28_11465) - 2276501..2277139 (-) 639 WP_419764376.1 adenylate kinase -
  ACNI28_RS11470 (ACNI28_11470) - 2277253..2277822 (+) 570 WP_419764377.1 adenylate kinase -
  ACNI28_RS11475 (ACNI28_11475) - 2277822..2278577 (+) 756 WP_419764378.1 competence/damage-inducible protein A -
  ACNI28_RS11480 (ACNI28_11480) - 2278574..2279227 (-) 654 WP_419764379.1 tetratricopeptide repeat protein -
  ACNI28_RS11485 (ACNI28_11485) - 2279224..2280246 (-) 1023 WP_419764380.1 alanine racemase -
  ACNI28_RS11490 (ACNI28_11490) uvrC 2280265..2282097 (-) 1833 WP_419766474.1 excinuclease ABC subunit UvrC Machinery gene
  ACNI28_RS11495 (ACNI28_11495) msrA 2282261..2282845 (-) 585 WP_419764381.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACNI28_RS11500 (ACNI28_11500) - 2282906..2284159 (-) 1254 WP_419764382.1 response regulator -
  ACNI28_RS11505 (ACNI28_11505) - 2284254..2284646 (+) 393 WP_419764383.1 tautomerase -
  ACNI28_RS11510 (ACNI28_11510) - 2284698..2284976 (+) 279 WP_419764384.1 antibiotic biosynthesis monooxygenase family protein -
  ACNI28_RS11515 (ACNI28_11515) - 2284978..2285448 (-) 471 WP_419764385.1 J domain-containing protein -
  ACNI28_RS11520 (ACNI28_11520) - 2285720..2285986 (+) 267 WP_419764386.1 DnaJ domain-containing protein -
  ACNI28_RS11525 (ACNI28_11525) - 2285999..2286868 (+) 870 WP_419764387.1 ADP-ribosylglycohydrolase family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71072.16 Da        Isoelectric Point: 9.1495

>NTDB_id=1101340 ACNI28_RS11490 WP_419766474.1 2280265..2282097(-) (uvrC) [MAG: Arcobacter sp. isolate LRMN1-1]
MNLEEKLKQLPSDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPHLRPAEKLGPRIYKMISEVKSCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIYVDLNEDFPRLEITRKVLKGANIKYFGPYSTGARDILDSIYETFPLVQKKAC
IKGKEACLFFQIKKCLAPCENRITKEEYAKILNNSMEYIYNKSKLLTKLKQKMQEYSDDFRFEEAMKIRDRIKTIEKSEI
KTGMDLATNENLDIFAIKNSNTKAVIVRMFIRDGKLASSSHDFLKVNLEDNEEFDFNEAYKRTLINYYSNEMPIIPKEIL
LANEIDELEDMEEFLKTKFSKKINIISPKVGKKKDLMDIALNNCDELLRIDSAKSSNTLYEEIQKLFNLNQTPLRVESFD
NSHMMGQATVGAMVVWDNDKFIKADFRHYNLESHDEYSQMREMLMRRVESFDKNPAPDLWIIDGGATLLKLAYNIVQSVG
VNLDIIAIAKEKIDFKAHRAKGAAKDIVHFKEAGEFTSIKLLTSDKRLHFVQRQRDEAHRFVINYHKKQKRTEDKQISLL
NIKGIGEAKVKKLLLYFGTFENIKNATIENLKEVLNEKDSILISNHFNQN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1101340 ACNI28_RS11490 WP_419766474.1 2280265..2282097(-) (uvrC) [MAG: Arcobacter sp. isolate LRMN1-1]
ATGAATTTAGAAGAAAAACTTAAACAACTCCCCTCTGATGCAGGTGTATACCAATACTTTGATAAAGATGGACATCTTTT
ATATGTGGGAAAAGCAAAAGTTCTAAAAAATAGAGTAAAATCTTACTTTAAATTTACTCCCCACCTTAGACCTGCTGAAA
AACTAGGTCCTAGAATTTATAAAATGATTAGTGAAGTAAAATCCTGTGAATGGATTGTAGTACCAAATGAACATGATGCA
CTAATCTTAGAAAATTCTCTTATAAAACAGTTAAAACCAAAATATAACATTCTTCTTCGTGATGATAAAACCTACCCTTA
TATTTATGTGGACTTAAATGAAGATTTTCCTAGACTTGAGATTACAAGAAAAGTTTTAAAAGGTGCCAATATAAAATATT
TTGGTCCATATTCAACTGGAGCAAGAGATATCTTAGACTCTATTTATGAAACTTTTCCACTTGTGCAAAAAAAAGCTTGT
ATAAAAGGCAAAGAGGCTTGTCTTTTTTTTCAAATCAAAAAGTGCTTAGCTCCGTGTGAAAATAGAATAACAAAAGAAGA
GTATGCCAAGATTTTAAACAACTCTATGGAATATATCTATAACAAATCAAAACTACTAACAAAACTAAAACAAAAAATGC
AAGAGTATTCTGATGATTTTCGATTTGAAGAGGCTATGAAAATAAGAGATAGAATAAAAACCATAGAAAAATCAGAAATA
AAAACAGGAATGGATTTAGCAACAAATGAAAATCTTGATATTTTTGCTATCAAAAATTCAAACACAAAAGCTGTAATTGT
AAGAATGTTTATACGTGATGGGAAACTAGCTTCTTCCTCCCATGACTTTTTAAAAGTAAACCTTGAAGATAATGAAGAGT
TTGATTTTAATGAAGCGTATAAAAGAACTTTAATAAACTACTACTCAAATGAGATGCCAATAATCCCAAAAGAGATCTTA
CTAGCTAATGAAATAGATGAATTAGAGGATATGGAAGAGTTTCTAAAAACAAAATTTTCTAAAAAAATAAATATAATAAG
TCCAAAAGTTGGAAAGAAAAAAGACCTTATGGATATAGCTTTAAATAATTGTGATGAACTTTTAAGAATAGATAGTGCGA
AAAGTTCCAATACACTTTATGAAGAGATACAAAAACTATTTAACTTAAATCAAACTCCTTTAAGAGTTGAAAGCTTTGAT
AACTCACATATGATGGGACAAGCTACAGTTGGAGCAATGGTTGTTTGGGATAATGATAAGTTTATAAAAGCTGATTTTAG
ACACTATAACTTAGAATCCCATGATGAATACTCACAAATGAGAGAGATGCTTATGCGAAGGGTTGAAAGCTTTGATAAAA
ACCCAGCACCTGATTTGTGGATAATTGATGGAGGAGCAACTTTACTTAAGCTTGCATACAACATTGTCCAATCAGTTGGA
GTAAATCTTGATATTATTGCAATTGCAAAAGAAAAGATTGATTTTAAAGCTCATAGGGCAAAAGGAGCTGCAAAAGATAT
TGTACATTTTAAAGAAGCTGGAGAGTTTACATCCATAAAACTTCTAACATCAGATAAAAGACTACATTTTGTACAAAGAC
AAAGAGATGAAGCACATAGATTTGTTATAAACTATCACAAAAAACAAAAAAGAACAGAAGATAAACAAATTTCACTTTTA
AACATAAAAGGTATAGGAGAAGCTAAAGTCAAAAAGTTACTTCTTTACTTTGGAACTTTTGAAAATATAAAAAATGCTAC
TATTGAAAATCTCAAAGAGGTTTTAAATGAAAAAGATAGTATTCTAATATCAAATCATTTTAATCAAAACTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-543)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.417

98.197

0.495

Multiple sequence alignment