Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | ACNI28_RS05070 | Genome accession | NZ_CP182350 |
| Coordinates | 1016186..1016566 (+) | Length | 126 a.a. |
| NCBI ID | WP_419766101.1 | Uniprot ID | - |
| Organism | MAG: Arcobacter sp. isolate LRMN1-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1011186..1021566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNI28_RS05045 (ACNI28_05045) | - | 1011404..1011736 (-) | 333 | WP_419766093.1 | hypothetical protein | - |
| ACNI28_RS05050 (ACNI28_05050) | - | 1011851..1012888 (-) | 1038 | WP_419766095.1 | hypothetical protein | - |
| ACNI28_RS05055 (ACNI28_05055) | - | 1012962..1014317 (-) | 1356 | WP_419766451.1 | class II 3-deoxy-7-phosphoheptulonate synthase | - |
| ACNI28_RS05060 (ACNI28_05060) | - | 1014341..1015333 (-) | 993 | WP_419766097.1 | transaldolase | - |
| ACNI28_RS05065 (ACNI28_05065) | serB | 1015455..1016075 (-) | 621 | WP_419766099.1 | phosphoserine phosphatase SerB | - |
| ACNI28_RS05070 (ACNI28_05070) | dprB | 1016186..1016566 (+) | 381 | WP_419766101.1 | Holliday junction resolvase RuvX | Machinery gene |
| ACNI28_RS05075 (ACNI28_05075) | lpoB | 1016592..1017203 (-) | 612 | WP_419766103.1 | penicillin-binding protein activator LpoB | - |
| ACNI28_RS05080 (ACNI28_05080) | - | 1017212..1017646 (-) | 435 | WP_419766105.1 | DUF1425 domain-containing protein | - |
| ACNI28_RS05085 (ACNI28_05085) | - | 1017659..1018984 (-) | 1326 | WP_419766106.1 | COG3014 family protein | - |
| ACNI28_RS05090 (ACNI28_05090) | acpS | 1018994..1019341 (-) | 348 | WP_419766108.1 | holo-ACP synthase | - |
| ACNI28_RS05095 (ACNI28_05095) | - | 1019372..1020331 (+) | 960 | WP_419766110.1 | ABC transporter permease | - |
| ACNI28_RS05100 (ACNI28_05100) | panC | 1020454..1021278 (+) | 825 | WP_419766112.1 | pantoate--beta-alanine ligase | - |
| ACNI28_RS05105 (ACNI28_05105) | - | 1021290..1021472 (-) | 183 | WP_419766114.1 | YgaP-like transmembrane domain | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14444.80 Da Isoelectric Point: 9.4910
>NTDB_id=1101335 ACNI28_RS05070 WP_419766101.1 1016186..1016566(+) (dprB) [MAG: Arcobacter sp. isolate LRMN1-1]
MKLASIDIGLKRIGVALSLTKTIVTPQTAILRKNRNQASNDVDKFLKEWEIEKLIVGFPSSSEDMQKRVKHFMTLLNFEG
EIIFQEENMSSIEAEDLMKGDIKYKRDGRVDSLAAKIILERYLARN
MKLASIDIGLKRIGVALSLTKTIVTPQTAILRKNRNQASNDVDKFLKEWEIEKLIVGFPSSSEDMQKRVKHFMTLLNFEG
EIIFQEENMSSIEAEDLMKGDIKYKRDGRVDSLAAKIILERYLARN
Nucleotide
Download Length: 381 bp
>NTDB_id=1101335 ACNI28_RS05070 WP_419766101.1 1016186..1016566(+) (dprB) [MAG: Arcobacter sp. isolate LRMN1-1]
TTGAAATTAGCCTCTATTGATATAGGATTAAAAAGAATTGGCGTAGCACTAAGCCTTACAAAGACTATAGTTACCCCACA
AACTGCTATCTTAAGAAAAAATAGAAATCAAGCATCAAATGATGTGGATAAGTTTTTAAAAGAGTGGGAAATAGAAAAAC
TCATTGTAGGCTTTCCAAGTTCTAGTGAAGATATGCAAAAAAGAGTTAAGCACTTTATGACACTCTTAAATTTCGAAGGT
GAAATAATTTTTCAAGAAGAAAACATGAGCTCAATAGAAGCAGAAGATTTAATGAAAGGTGATATAAAATATAAAAGAGA
TGGGAGAGTGGATTCCCTTGCAGCTAAAATAATCCTTGAGAGATATTTAGCAAGAAATTAA
TTGAAATTAGCCTCTATTGATATAGGATTAAAAAGAATTGGCGTAGCACTAAGCCTTACAAAGACTATAGTTACCCCACA
AACTGCTATCTTAAGAAAAAATAGAAATCAAGCATCAAATGATGTGGATAAGTTTTTAAAAGAGTGGGAAATAGAAAAAC
TCATTGTAGGCTTTCCAAGTTCTAGTGAAGATATGCAAAAAAGAGTTAAGCACTTTATGACACTCTTAAATTTCGAAGGT
GAAATAATTTTTCAAGAAGAAAACATGAGCTCAATAGAAGCAGAAGATTTAATGAAAGGTGATATAAAATATAAAAGAGA
TGGGAGAGTGGATTCCCTTGCAGCTAAAATAATCCTTGAGAGATATTTAGCAAGAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
48.819 |
100 |
0.492 |