Detailed information NTG1101281

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACNI3D_RS10975
• Genome accession: NZ_CP182343
• Coordinates: 2182017..2183366 (+)
• Length: 449 a.a.
• NCBI ID: WP_419767023.1
• Uniprot ID: -
• Organism: MAG: Arcobacter sp. isolate Pygsuia-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Integron	2179682..2182007	2182017..2183366	flank	10

Gene organization within MGE regions

Location: 2179682..2183366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNI3D_RS10960 (ACNI3D_10960)	-	2179682..2179849 (-)	168	WP_419767020.1	YodC family protein	-
ACNI3D_RS10965 (ACNI3D_10965)	-	2180184..2180747 (-)	564	WP_419767021.1	hypothetical protein	-
ACNI3D_RS10970 (ACNI3D_10970)	-	2181045..2182007 (+)	963	WP_419767022.1	integron integrase	-
ACNI3D_RS10975 (ACNI3D_10975)	radA	2182017..2183366 (+)	1350	WP_419767023.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49356.86 Da
• Isoelectric Point: 6.1038

>NTDB_id=1101281 ACNI3D_RS10975 WP_419767023.1 2182017..2183366(+) (radA) [MAG: Arcobacter sp. isolate Pygsuia-1]
MAKKKTTLFECQHCGEQSTKWMGKCPSCGGWDSFVELNTEQQEVLKQTSKIINTTSKAKPITQIEQDDIIRFSSNNHEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGDISQSGKKVLYVSGEESMGQIKLRANRLDANSDNLYLLSEIKLEEIQE
ELLRQDYEAVVIDSIQTIYSSSLTSAPGSVSQVREITFELMRKAKESDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKPQSGSALTVVMEGSRALIIEVQALVCESTYPN
PKRSATGFDVNRLNMLLALLEKKLDLPLNHYDVFINISGGIKIKESSADLAVIASIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDMRLKEASAQGVTKAIVAQKTNLKTKLKIFPVDEVVKMIELF

Nucleotide

• Length: 1350 bp

>NTDB_id=1101281 ACNI3D_RS10975 WP_419767023.1 2182017..2183366(+) (radA) [MAG: Arcobacter sp. isolate Pygsuia-1]
ATGGCTAAGAAAAAAACAACACTTTTTGAGTGTCAACACTGTGGCGAACAATCTACCAAATGGATGGGTAAATGTCCATC
TTGTGGAGGTTGGGATAGCTTTGTTGAACTCAATACCGAACAACAAGAAGTATTAAAACAAACATCAAAGATAATAAACA
CAACATCAAAAGCAAAACCAATAACACAAATAGAACAAGACGATATCATTCGATTTTCATCAAATAACCATGAATTTGAT
TTAGTCCTAGGAGGTGGAATAGTTCCGGGAAGTCTTACTCTTATTGGAGGAAGTCCGGGAGTTGGTAAGTCAACCCTACT
TTTAAAAGTAGCAGGTGACATCTCACAATCAGGTAAAAAAGTTCTTTATGTCTCAGGTGAAGAGAGTATGGGACAAATAA
AACTTCGAGCAAATAGACTTGATGCAAATAGTGATAACCTTTATTTATTATCTGAAATCAAACTAGAAGAGATACAAGAA
GAACTATTAAGACAAGATTATGAAGCAGTAGTTATTGACTCTATTCAAACTATCTATTCAAGCTCACTCACCTCTGCACC
CGGCTCTGTTTCACAAGTAAGAGAGATAACCTTTGAACTTATGCGTAAAGCAAAAGAATCTGATATCGCTATGTTTATTA
TAGGACATATCACAAAAGATGGAAGCATCGCAGGACCTAGAGTTTTAGAACATATGGTTGATACTGTTTTATACTTTGAA
GGAGAATCATCAAAAGAACTTAGAATGCTAAGGGGCTTTAAAAATAGATTTGGAAGTACAAGTGAGATAGGTATCTTTGA
GATGACAGCAGAAGGACTTATAAGTGCTAAAGATATAGCCTCTAAGTTTTTTGATAAAAGTAAACCCCAAAGTGGCTCTG
CTTTAACTGTGGTTATGGAAGGAAGTCGAGCACTTATTATAGAAGTACAAGCCTTAGTTTGTGAAAGTACCTATCCAAAC
CCAAAACGAAGTGCCACAGGCTTTGATGTAAATAGATTAAACATGCTTTTAGCCCTACTTGAAAAGAAACTTGACCTTCC
ACTAAATCACTATGATGTATTTATAAATATAAGTGGTGGTATTAAGATAAAAGAGAGTTCTGCTGATCTGGCTGTGATTG
CTTCGATTATTAGTTCATTTAGGGATAGACCTATCTCAAAAGAGTCAGTATTTATTGGTGAAGTTTCACTAACTGGTGAG
ATAAAAGATGTATATTCTATAGATATGAGACTAAAAGAGGCTAGTGCGCAAGGTGTTACAAAAGCAATAGTTGCTCAAAA
AACAAATTTAAAAACAAAACTAAAAATCTTCCCAGTGGATGAAGTAGTAAAAATGATTGAGCTATTTTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• Subunit ChlI of Mg-chelatase (ChlI) (348-427)

• AAA domain (AAA_25) (66-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.585	95.1	0.481
radA	Streptococcus mitis NCTC 12261	47.796	95.991	0.459
radA	Streptococcus pneumoniae Rx1	47.796	95.991	0.459
radA	Streptococcus pneumoniae D39	47.796	95.991	0.459
radA	Streptococcus pneumoniae R6	47.796	95.991	0.459
radA	Streptococcus pneumoniae TIGR4	47.796	95.991	0.459
radA	Streptococcus mitis SK321	47.796	95.991	0.459