Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNJS6_RS07720 Genome accession   NZ_CP182336
Coordinates   1581614..1582243 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A134_1EC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576614..1587243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJS6_RS07700 ycbZ 1577015..1578775 (-) 1761 WP_000156518.1 AAA family ATPase -
  ACNJS6_RS07705 matP 1578961..1579413 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNJS6_RS07710 ompA 1579489..1580529 (-) 1041 WP_000750416.1 porin OmpA -
  ACNJS6_RS07715 sulA 1580886..1581395 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNJS6_RS07720 sxy/tfoX 1581614..1582243 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNJS6_RS07725 yccS 1582206..1584368 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACNJS6_RS07730 yccF 1584378..1584824 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNJS6_RS07735 helD 1584947..1587001 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101252 ACNJS6_RS07720 WP_000839153.1 1581614..1582243(+) (sxy/tfoX) [Escherichia coli strain A134_1EC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101252 ACNJS6_RS07720 WP_000839153.1 1581614..1582243(+) (sxy/tfoX) [Escherichia coli strain A134_1EC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment