Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACNANF_RS26260 Genome accession   NZ_CP182325
Coordinates   5134559..5134843 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain BSF-CH1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5129559..5139843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNANF_RS26225 tmk 5129751..5130377 (+) 627 WP_000677221.1 dTMP kinase -
  ACNANF_RS26230 holB 5130413..5131396 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  ACNANF_RS26235 - 5131402..5132229 (+) 828 WP_000272429.1 PSP1 domain-containing protein -
  ACNANF_RS26240 yabA 5132244..5132594 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  ACNANF_RS26245 - 5132677..5133417 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACNANF_RS26250 - 5133404..5133694 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  ACNANF_RS26255 rsmI 5133663..5134538 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACNANF_RS26260 abrB 5134559..5134843 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACNANF_RS26265 metG 5135329..5137311 (+) 1983 WP_000134132.1 methionine--tRNA ligase -
  ACNANF_RS26270 - 5137478..5138245 (+) 768 WP_000895851.1 TatD family hydrolase -
  ACNANF_RS26275 rnmV 5138460..5139017 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=1101211 ACNANF_RS26260 WP_000843036.1 5134559..5134843(-) (abrB) [Bacillus cereus strain BSF-CH1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1101211 ACNANF_RS26260 WP_000843036.1 5134559..5134843(-) (abrB) [Bacillus cereus strain BSF-CH1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment