Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACNANF_RS05515 Genome accession   NZ_CP182325
Coordinates   1078367..1078690 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain BSF-CH1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073367..1083690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNANF_RS05490 - 1073716..1075002 (+) 1287 WP_098212772.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ACNANF_RS05495 sipW 1075193..1075762 (+) 570 WP_000767792.1 signal peptidase I SipW -
  ACNANF_RS05500 - 1075823..1076410 (+) 588 WP_000172852.1 CalY family protein -
  ACNANF_RS05505 - 1076530..1077315 (+) 786 WP_144572582.1 DUF4047 domain-containing protein -
  ACNANF_RS05510 calY 1077701..1078294 (+) 594 WP_416806439.1 biofilm matrix protein CalY -
  ACNANF_RS05515 sinR 1078367..1078690 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  ACNANF_RS05520 - 1078770..1078904 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  ACNANF_RS05525 inhA1 1079247..1081637 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACNANF_RS05530 - 1081809..1083176 (+) 1368 WP_000028375.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1101177 ACNANF_RS05515 WP_000578885.1 1078367..1078690(-) (sinR) [Bacillus cereus strain BSF-CH1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1101177 ACNANF_RS05515 WP_000578885.1 1078367..1078690(-) (sinR) [Bacillus cereus strain BSF-CH1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment