Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACNVPQ_RS13455 Genome accession   NZ_CP182318
Coordinates   2733382..2734134 (-) Length   250 a.a.
NCBI ID   WP_033574185.1    Uniprot ID   -
Organism   Bacillus velezensis strain Scm3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2728382..2739134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVPQ_RS13430 mreC 2728818..2729681 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACNVPQ_RS13435 mreB 2729712..2730725 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACNVPQ_RS13440 radC 2730817..2731512 (-) 696 WP_007408165.1 RadC family protein -
  ACNVPQ_RS13445 - 2731544..2732113 (-) 570 WP_007408164.1 Maf family protein -
  ACNVPQ_RS13450 - 2732254..2733255 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  ACNVPQ_RS13455 comC 2733382..2734134 (-) 753 WP_033574185.1 prepilin peptidase Machinery gene
  ACNVPQ_RS13460 - 2734274..2735566 (-) 1293 WP_033574186.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACNVPQ_RS13465 - 2735625..2738267 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  ACNVPQ_RS13470 - 2738720..2738911 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=1101141 ACNVPQ_RS13455 WP_033574185.1 2733382..2734134(-) (comC) [Bacillus velezensis strain Scm3]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGFHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1101141 ACNVPQ_RS13455 WP_033574185.1 2733382..2734134(-) (comC) [Bacillus velezensis strain Scm3]
GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCTTTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment