Detailed information NTG1101096

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACNVPQ_RS01985
• Genome accession: NZ_CP182318
• Coordinates: 391838..392986 (+)
• Length: 382 a.a.
• NCBI ID: WP_012116798.1
• Uniprot ID: A3KLC9
• Organism: Bacillus velezensis strain Scm3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 386838..397986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNVPQ_RS01965	-	387235..387918 (-)	684	WP_100001209.1	ABC transporter ATP-binding protein	-
ACNVPQ_RS01970	-	387933..389369 (-)	1437	WP_076425710.1	ABC transporter permease	-
ACNVPQ_RS01975	-	389582..390265 (+)	684	WP_007410267.1	response regulator transcription factor	-
ACNVPQ_RS01980	-	390252..391685 (+)	1434	WP_162492834.1	sensor histidine kinase	-
ACNVPQ_RS01985	rapC	391838..392986 (+)	1149	WP_012116798.1	Rap family tetratricopeptide repeat protein	Regulator
ACNVPQ_RS01990	phrC	392970..393089 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ACNVPQ_RS01995	-	393238..393348 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
ACNVPQ_RS02000	-	393428..394792 (-)	1365	WP_052827044.1	aspartate kinase	-
ACNVPQ_RS02005	ceuB	395206..396159 (+)	954	WP_059366593.1	ABC transporter permease	Machinery gene
ACNVPQ_RS02010	-	396149..397096 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
ACNVPQ_RS02015	-	397090..397848 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45490.68 Da
• Isoelectric Point: 4.9916

>NTDB_id=1101096 ACNVPQ_RS01985 WP_012116798.1 391838..392986(+) (rapC) [Bacillus velezensis strain Scm3]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=1101096 ACNVPQ_RS01985 WP_012116798.1 391838..392986(+) (rapC) [Bacillus velezensis strain Scm3]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGATTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

3D structure

• AlphaFold DB: A3KLC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	56.842	99.476	0.565