Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACM4Z8_RS14550 Genome accession   NZ_CP182308
Coordinates   2945480..2946109 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC100     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2940480..2951109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM4Z8_RS14535 (ACM4Z8_14535) helD 2940722..2942776 (-) 2055 WP_000420533.1 DNA helicase IV -
  ACM4Z8_RS14540 (ACM4Z8_14540) yccF 2942899..2943345 (+) 447 WP_416846574.1 YccF domain-containing protein -
  ACM4Z8_RS14545 (ACM4Z8_14545) yccS 2943355..2945517 (+) 2163 WP_000875044.1 YccS family putative transporter -
  ACM4Z8_RS14550 (ACM4Z8_14550) sxy/tfoX 2945480..2946109 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACM4Z8_RS14555 (ACM4Z8_14555) sulA 2946328..2946837 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACM4Z8_RS14560 (ACM4Z8_14560) ompA 2947194..2948246 (+) 1053 WP_095764440.1 porin OmpA -
  ACM4Z8_RS14565 (ACM4Z8_14565) matP 2948321..2948773 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACM4Z8_RS14570 (ACM4Z8_14570) ycbZ 2948959..2950719 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1101061 ACM4Z8_RS14550 WP_000839153.1 2945480..2946109(-) (sxy/tfoX) [Escherichia coli strain EC100]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1101061 ACM4Z8_RS14550 WP_000839153.1 2945480..2946109(-) (sxy/tfoX) [Escherichia coli strain EC100]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment