Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACNJYY_RS14705 Genome accession   NZ_CP182294
Coordinates   2728675..2731026 (-) Length   783 a.a.
NCBI ID   WP_416729074.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2723675..2736026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS14680 (ACNJYY_14680) - 2724326..2724451 (-) 126 WP_416729071.1 hypothetical protein -
  ACNJYY_RS14685 (ACNJYY_14685) - 2724874..2725047 (-) 174 WP_186320473.1 hypothetical protein -
  ACNJYY_RS14690 (ACNJYY_14690) dtd 2725106..2725549 (-) 444 WP_416729072.1 D-aminoacyl-tRNA deacylase -
  ACNJYY_RS14695 (ACNJYY_14695) - 2725572..2727755 (-) 2184 WP_416729073.1 RelA/SpoT family protein -
  ACNJYY_RS14700 (ACNJYY_14700) - 2728142..2728654 (-) 513 WP_144698846.1 adenine phosphoribosyltransferase -
  ACNJYY_RS14705 (ACNJYY_14705) recJ 2728675..2731026 (-) 2352 WP_416729074.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACNJYY_RS14710 (ACNJYY_14710) secDF 2731098..2733312 (-) 2215 Protein_2852 protein translocase subunit SecDF -
  ACNJYY_RS14715 (ACNJYY_14715) - 2733545..2733805 (-) 261 WP_416729075.1 post-transcriptional regulator -
  ACNJYY_RS14720 (ACNJYY_14720) spoVB 2733905..2735455 (+) 1551 WP_416729076.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 88062.55 Da        Isoelectric Point: 4.7557

>NTDB_id=1101029 ACNJYY_RS14705 WP_416729074.1 2728675..2731026(-) (recJ) [Fictibacillus sp. JL2B1089]
MLEPRTRWEIQEPSEEKAKWLSQELDIPLLIANLLVVRGIETIEKAEAFLNIGTDQFHDPFMMDGMKESVERIHRAVESN
EKILIFGDYDADGVSSTTVMYYALKELGAQFDYYIPNRFTEGYGPNEPALRKAKEDGYSLVVTVDTGISAVHEANIAKEI
GLDFIITDHHEAPPVLPDAYSIINPKKPGCTYPFSGLAGVGVAFKVAHALHGKPPLHLLDYACIGTIADLVPLVDENRVI
AKLGIEALSKTDKIGLQELLKVAGLYEKELTAEDVGFAIGPRVNAAGRLGSAMPVVELFTSTDRDESAMLSQEIDSVNKE
RQGIVNEITKEAIAMVEESFSPDENEVLVLAKEGWNPGVIGIVASRLVEKFYRPTIVLCLDPEKETAKGSARSIKGFDMF
ENLSGSRDILPHFGGHPMAAGMTLSMHDVDELRSRLIRQAKECLKPEDYLPVTTIDLTARLNEISLETVELLSTLSPFGV
GNPSPRVMVEEVPIREMKKIGSQSNHLKLQVGNGELSVLDCIGFQKGSLLEEMTPYSLVSIVGQIQLNEWNGYRKPQLLL
EDLSVNHFQLFDYRGLKDAAKRLIGLPYSKTCFIAFEEETVTHKDFVALSDQMIGEDELLTLPEDYFKDKNLVFLDVPPS
LTRFSEWLETIGEPSRIYAVFHQSTEHFFTTLPTREHFKWFYGFLAKRKTFNVKRDGAELAKWKGWSKETIDFMSKVFFE
LDFVTIDDGVIFINKEPSKRELESSETYQKKFEQADIENQLVYSSYHSLKSWFTEQTRPKASL

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=1101029 ACNJYY_RS14705 WP_416729074.1 2728675..2731026(-) (recJ) [Fictibacillus sp. JL2B1089]
ATGTTGGAGCCTAGAACACGGTGGGAGATACAAGAACCATCTGAAGAAAAGGCAAAATGGTTGTCACAAGAATTAGATAT
CCCTCTTCTGATCGCGAATCTATTGGTTGTCAGAGGAATTGAAACGATAGAGAAAGCAGAAGCATTTTTAAATATAGGTA
CCGACCAATTTCACGATCCATTCATGATGGATGGGATGAAAGAGAGCGTTGAGCGGATACATAGAGCTGTAGAATCGAAT
GAGAAGATTTTAATTTTTGGCGATTATGACGCAGATGGTGTAAGCAGTACAACGGTTATGTATTATGCACTGAAAGAACT
CGGCGCACAGTTTGACTATTATATTCCGAACCGCTTTACAGAAGGCTATGGTCCGAATGAGCCTGCACTAAGAAAAGCGA
AAGAGGATGGTTACTCACTCGTGGTAACCGTTGATACAGGAATCTCAGCTGTACATGAAGCTAATATCGCAAAAGAGATC
GGGCTAGACTTCATTATCACGGACCACCATGAGGCGCCTCCTGTATTGCCGGATGCTTATAGCATTATCAATCCTAAGAA
ACCGGGCTGTACATATCCTTTTTCTGGTCTCGCAGGTGTAGGTGTAGCATTTAAAGTAGCACATGCCCTTCATGGTAAGC
CACCTCTACATTTGCTTGATTACGCATGCATTGGAACAATAGCGGACCTTGTTCCGCTTGTTGATGAAAATAGAGTGATC
GCGAAACTCGGGATAGAGGCACTCTCGAAAACGGATAAGATCGGATTGCAAGAACTGCTAAAAGTAGCGGGACTTTATGA
AAAAGAATTGACTGCTGAAGATGTAGGATTCGCGATCGGCCCGCGAGTGAATGCAGCAGGAAGACTTGGTTCAGCGATGC
CAGTGGTGGAACTGTTTACTTCAACTGATCGAGACGAATCAGCCATGTTGTCACAAGAGATCGATTCTGTAAACAAAGAA
CGTCAAGGAATCGTAAACGAGATCACAAAAGAAGCGATCGCAATGGTCGAAGAAAGTTTTTCTCCTGATGAGAATGAAGT
GCTAGTCCTCGCCAAAGAGGGCTGGAATCCAGGTGTTATTGGTATCGTCGCTTCACGACTGGTTGAAAAATTTTATCGCC
CTACGATCGTGCTTTGTTTGGATCCTGAAAAGGAAACGGCAAAAGGGTCCGCGCGAAGCATCAAAGGATTTGATATGTTT
GAGAACCTTTCAGGATCTAGGGACATTCTTCCTCATTTCGGTGGACATCCGATGGCAGCAGGAATGACACTTTCCATGCA
TGATGTTGATGAATTAAGAAGCAGGCTTATCCGGCAAGCTAAGGAATGTTTAAAACCAGAAGACTATCTGCCGGTTACAA
CGATCGATCTTACAGCAAGATTAAATGAGATATCACTAGAAACGGTTGAGCTGTTAAGTACGTTATCTCCTTTTGGTGTT
GGAAACCCATCGCCTCGTGTAATGGTTGAAGAAGTCCCGATCCGTGAGATGAAAAAGATAGGAAGTCAGTCCAATCACCT
TAAGTTACAGGTAGGAAACGGTGAGCTATCAGTTCTCGATTGCATTGGCTTTCAAAAGGGTAGCTTGTTAGAAGAGATGA
CTCCTTATTCGTTGGTTTCGATCGTTGGACAGATCCAACTGAACGAATGGAACGGCTATAGAAAGCCTCAGCTTCTTCTT
GAAGATCTTTCTGTCAATCATTTTCAACTTTTTGATTACAGAGGTCTTAAAGATGCTGCAAAAAGGTTGATCGGTCTGCC
GTACTCGAAAACATGTTTTATCGCGTTTGAAGAAGAAACAGTAACGCATAAAGATTTTGTAGCGCTATCTGATCAAATGA
TCGGTGAAGATGAGTTATTGACTCTACCTGAGGATTATTTTAAAGATAAGAATTTAGTCTTCTTAGATGTTCCTCCTTCT
CTAACTCGCTTTTCAGAATGGCTGGAAACGATCGGTGAACCTTCAAGGATCTATGCGGTGTTTCATCAGAGTACAGAACA
CTTTTTCACGACGTTACCAACGAGAGAGCATTTCAAATGGTTCTATGGATTTCTTGCAAAAAGGAAAACCTTTAACGTGA
AGAGGGATGGTGCAGAACTGGCGAAATGGAAAGGCTGGTCGAAAGAAACAATAGATTTCATGTCAAAGGTGTTTTTTGAG
CTGGATTTTGTTACAATAGACGATGGTGTTATTTTCATTAACAAAGAACCTAGCAAACGAGAATTAGAAAGCTCTGAAAC
CTATCAGAAAAAGTTTGAACAAGCAGACATTGAAAATCAGCTCGTTTACTCTTCTTATCATTCTTTAAAAAGCTGGTTTA
CAGAACAAACACGGCCAAAAGCCAGTTTGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-773)

RecJ OB domain (RecJ_OB)

(455-562)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.41

99.617

0.512

Multiple sequence alignment