Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACNJYY_RS13600 Genome accession   NZ_CP182294
Coordinates   2525338..2527035 (-) Length   565 a.a.
NCBI ID   WP_416728930.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2520338..2532035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS13585 (ACNJYY_13585) - 2522503..2522739 (+) 237 WP_416728929.1 DUF2627 domain-containing protein -
  ACNJYY_RS13590 (ACNJYY_13590) spo0A 2522783..2523586 (-) 804 WP_416731875.1 sporulation transcription factor Spo0A -
  ACNJYY_RS13595 (ACNJYY_13595) spoIVB 2523916..2525202 (-) 1287 WP_416731876.1 SpoIVB peptidase -
  ACNJYY_RS13600 (ACNJYY_13600) recN 2525338..2527035 (-) 1698 WP_416728930.1 DNA repair protein RecN Machinery gene
  ACNJYY_RS13605 (ACNJYY_13605) ahrC 2527060..2527509 (-) 450 WP_066396006.1 transcriptional regulator AhrC/ArgR -
  ACNJYY_RS13610 (ACNJYY_13610) - 2527617..2528435 (-) 819 WP_416728931.1 TlyA family RNA methyltransferase -
  ACNJYY_RS13615 (ACNJYY_13615) dxs 2528432..2530330 (-) 1899 WP_416728932.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACNJYY_RS13620 (ACNJYY_13620) - 2530351..2530947 (-) 597 WP_066396012.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63807.82 Da        Isoelectric Point: 5.3003

>NTDB_id=1101024 ACNJYY_RS13600 WP_416728930.1 2525338..2527035(-) (recN) [Fictibacillus sp. JL2B1089]
MLAELSIRNFAIIDSLSVSFSKGLTVLTGETGAGKSIIIDAIGLLIGGRGSTEFVRYGTQKAEIEGLFHIHPGHRVYDKC
EEFGIAISDEDEMVVLKRDITENGKSICRVNGKLVTLSVLKEIGQALVDIHGQHETQYLMQPDKHLFLLDSFGDKDFKQE
LISYESTFRDYKEINKQLSELSRNEQEIAQRIDLLEYQYQEIAGSNLIPDEDVKLEEEKRMLSNFERIHGSLQDAYHNLY
GEGKALELVSSALADFSQVAALDESLKADEEQFGNSFYVLEELTYKIRDMFDSLEYNPERLNSIESRLDELSKLKRKYGS
SVKEMIDYSEKIKKELELIQNKDNHIEELKKKQDKLIAKLEVSGKKLTKRRTETAKVLKNSIQQQLKELYMEKTKFEVVM
KRIEDNQFLRTGLDSVEFYISPNPGEPLKPLSKVASGGELSRIILALKTIFSENQGITAIIFDEVDTGVSGRVAQAIAEK
IYKVSVGSQVLCISHLPQVAAMSDTHLHISKDTLQGRTVTKVLTLKTDEKVNEIGRMISGVEITDLTRQHAQELLELAAS
IKKTS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=1101024 ACNJYY_RS13600 WP_416728930.1 2525338..2527035(-) (recN) [Fictibacillus sp. JL2B1089]
TTGCTGGCAGAATTAAGTATTCGTAATTTTGCTATTATTGATTCTCTAAGTGTTTCTTTCAGTAAAGGGTTAACCGTATT
AACAGGGGAAACCGGTGCAGGAAAGTCCATCATCATCGATGCGATCGGACTTCTGATTGGTGGCCGCGGCTCTACGGAAT
TTGTACGCTATGGTACTCAAAAAGCGGAAATCGAAGGGTTGTTTCATATTCATCCAGGTCATCGTGTATATGATAAATGT
GAGGAATTTGGAATTGCGATTTCAGATGAAGATGAGATGGTCGTGCTTAAAAGGGATATAACGGAGAACGGAAAAAGCAT
TTGCAGAGTAAACGGAAAGCTTGTTACGCTGTCTGTTCTTAAGGAGATTGGACAGGCCTTAGTTGATATTCATGGGCAGC
ATGAAACGCAATATTTAATGCAGCCTGACAAGCATCTTTTTTTACTCGATAGTTTTGGTGATAAAGATTTTAAACAAGAG
CTAATTTCGTACGAATCAACATTTAGGGACTACAAAGAAATCAACAAACAGCTTTCAGAGCTCTCTAGAAACGAACAAGA
GATCGCGCAGAGAATAGACTTGCTCGAATATCAGTACCAAGAGATAGCGGGCAGCAACCTCATTCCTGATGAGGATGTTA
AGCTTGAGGAAGAAAAAAGAATGCTCTCGAATTTTGAAAGAATTCATGGCTCTCTTCAGGATGCTTACCATAATCTTTAT
GGTGAAGGAAAAGCGCTTGAACTTGTATCTAGTGCGCTAGCTGATTTTTCGCAGGTCGCAGCACTTGATGAATCTTTAAA
AGCGGACGAAGAGCAATTTGGAAACAGCTTTTATGTACTTGAAGAGCTTACATATAAGATTCGGGATATGTTTGATTCAT
TAGAATACAACCCGGAAAGGCTTAACAGCATCGAATCACGTCTTGATGAACTAAGTAAGCTTAAACGCAAATATGGTTCT
TCAGTAAAAGAAATGATCGATTATAGTGAAAAGATTAAAAAAGAGTTAGAACTCATTCAGAACAAAGATAATCATATTGA
AGAACTCAAGAAAAAGCAGGATAAGCTCATTGCCAAACTTGAGGTATCAGGTAAAAAACTGACTAAGCGGAGAACGGAGA
CCGCTAAAGTCTTAAAGAACAGCATTCAGCAGCAGCTTAAAGAGCTTTATATGGAAAAAACTAAATTTGAAGTCGTAATG
AAGCGGATTGAGGATAATCAGTTTTTAAGAACTGGACTGGATTCTGTAGAATTTTATATTTCTCCGAATCCTGGAGAACC
GCTTAAACCACTATCGAAAGTAGCATCTGGCGGGGAGCTTTCCAGAATTATTCTAGCATTGAAAACCATCTTTTCTGAAA
ACCAAGGAATTACCGCCATTATTTTTGATGAAGTAGATACAGGAGTCTCTGGACGAGTCGCTCAAGCGATAGCAGAAAAG
ATCTATAAAGTTTCTGTAGGTTCACAAGTACTTTGTATTTCTCACCTTCCACAAGTTGCAGCGATGTCTGACACGCATCT
TCATATCTCTAAAGATACACTTCAAGGAAGAACGGTTACAAAGGTCCTAACATTAAAAACGGATGAAAAAGTAAATGAGA
TAGGCAGAATGATCTCGGGTGTTGAGATTACTGACCTTACGAGGCAGCATGCTCAAGAATTATTAGAGCTTGCTGCCTCA
ATCAAAAAGACATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.073

100

0.552

Multiple sequence alignment