Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNJYY_RS00570 Genome accession   NZ_CP182294
Coordinates   113550..114926 (+) Length   458 a.a.
NCBI ID   WP_144704547.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108550..119926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS00555 (ACNJYY_00555) - 108982..109515 (+) 534 WP_066390592.1 UvrB/UvrC motif-containing protein -
  ACNJYY_RS00560 (ACNJYY_00560) - 109519..110586 (+) 1068 WP_416730169.1 protein arginine kinase -
  ACNJYY_RS00565 (ACNJYY_00565) clpC 110601..113021 (+) 2421 WP_137792297.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACNJYY_RS00570 (ACNJYY_00570) radA 113550..114926 (+) 1377 WP_144704547.1 DNA repair protein RadA Machinery gene
  ACNJYY_RS00575 (ACNJYY_00575) disA 114935..116008 (+) 1074 WP_416730170.1 DNA integrity scanning diadenylate cyclase DisA -
  ACNJYY_RS00580 (ACNJYY_00580) - 116104..117195 (+) 1092 WP_416730171.1 PIN/TRAM domain-containing protein -
  ACNJYY_RS00585 (ACNJYY_00585) ispD 117214..117909 (+) 696 WP_416730172.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACNJYY_RS00590 (ACNJYY_00590) ispF 117906..118382 (+) 477 WP_416731777.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49817.46 Da        Isoelectric Point: 7.1423

>NTDB_id=1101006 ACNJYY_RS00570 WP_144704547.1 113550..114926(+) (radA) [Fictibacillus sp. JL2B1089]
MAKVKSIFLCQDCGYESPKWMGKCPGCHAWNTMVEETIRPEKNIRGLSSGGDKNVKQKPQSIADVKSEQEPRIPTNYQEF
NRVLGGGIVPGSMVLVGGDPGIGKSTLLLQTSAQLAKKGERVLYISGEESVKQTKLRADRLEIDAKDLFVLAETDLELIE
QAMSDVMPSVMIIDSIQTVYRAEVTSAPGSVSQVRECTSHLMRMAKTKGIAVFIVGHVTKEGNIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGVFEMKEVGLEEVLNPSEIFLEERSKGAAGSTVVASLEGTRPMLVELQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLNVAGGVRLDEPAIDLAVAISIASSFRDSPTKPTDVMIGEIGLT
GEVRRVSRIEQRVHEAAKLGFTRAIIPDKNIGGWTVPKGIQVVGVSTVYEALQAALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1101006 ACNJYY_RS00570 WP_144704547.1 113550..114926(+) (radA) [Fictibacillus sp. JL2B1089]
ATGGCTAAAGTAAAATCAATCTTTCTTTGCCAAGATTGCGGTTACGAATCACCGAAATGGATGGGGAAATGCCCCGGTTG
CCATGCGTGGAACACGATGGTGGAGGAAACGATTCGTCCTGAAAAAAACATAAGAGGGTTAAGCTCTGGCGGAGATAAGA
ACGTAAAGCAGAAACCTCAGTCGATAGCGGATGTGAAAAGCGAGCAAGAGCCGCGGATACCGACAAACTATCAGGAGTTC
AACCGTGTACTAGGTGGAGGGATCGTTCCAGGTTCAATGGTTTTAGTTGGTGGAGACCCCGGAATTGGTAAGTCTACCTT
GTTGCTGCAAACATCTGCACAGCTCGCAAAAAAAGGAGAGCGTGTTCTATACATATCGGGTGAGGAATCTGTGAAACAGA
CAAAGCTCCGTGCCGATCGTTTAGAGATCGACGCTAAGGACTTGTTTGTTCTAGCAGAAACAGATTTAGAACTGATCGAA
CAGGCGATGTCTGATGTGATGCCTTCTGTGATGATCATCGATTCGATTCAAACCGTTTATCGAGCTGAAGTCACTTCCGC
TCCTGGAAGTGTATCGCAAGTACGAGAGTGTACATCGCATTTGATGCGCATGGCGAAAACAAAAGGTATCGCGGTATTTA
TTGTAGGACATGTTACAAAAGAAGGAAATATCGCGGGTCCGCGTCTTTTAGAGCACATGGTAGATGCCGTATTGTACTTT
GAGGGTGAGCGGCATCACACTTTCCGAATCTTACGAGCAGTTAAGAACCGTTTTGGCTCTACGAATGAAATCGGTGTTTT
TGAAATGAAAGAAGTAGGTCTTGAAGAAGTATTAAATCCTTCTGAAATCTTTTTAGAAGAACGTTCGAAAGGGGCAGCGG
GTTCGACCGTAGTTGCTTCTCTAGAAGGAACGCGACCGATGCTAGTAGAGCTTCAAGCACTAATATCGCCAACGAGCTTT
GGAAATCCTAGGAGGATGGCTACGGGTATCGATCATAACCGCGTATCACTGCTTATGGCCGTTTTAGAAAAGAGAGTCGG
ATTGCTTCTTCAGAACCAGGATGCATATCTAAACGTTGCAGGCGGTGTCCGACTGGATGAGCCGGCGATCGATCTTGCAG
TTGCGATCAGCATCGCTTCAAGCTTTCGCGATTCACCAACCAAGCCAACAGATGTTATGATTGGAGAAATAGGATTAACG
GGAGAGGTTAGAAGAGTTTCCCGTATCGAGCAGCGCGTACATGAAGCTGCGAAGTTAGGTTTTACGCGAGCTATTATACC
TGATAAAAATATCGGTGGCTGGACGGTTCCAAAAGGAATTCAAGTCGTCGGGGTATCGACCGTTTATGAGGCATTACAAG
CAGCGTTAGGAGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-222)

Subunit ChlI of Mg-chelatase (ChlI)

(351-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.799

100

0.738
  radA Streptococcus pneumoniae Rx1

62.198

99.345

0.618
  radA Streptococcus pneumoniae D39

62.198

99.345

0.618
  radA Streptococcus pneumoniae R6

62.198

99.345

0.618
  radA Streptococcus pneumoniae TIGR4

62.198

99.345

0.618
  radA Streptococcus mitis NCTC 12261

62.198

99.345

0.618
  radA Streptococcus mitis SK321

61.978

99.345

0.616

Multiple sequence alignment