Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNHKS_RS07565 Genome accession   NZ_CP182145
Coordinates   1553695..1554324 (+) Length   209 a.a.
NCBI ID   WP_416510071.1    Uniprot ID   -
Organism   Escherichia coli strain CUWW10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548695..1559324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKS_RS07545 (ACNHKS_07545) ycbZ 1549085..1550845 (-) 1761 WP_053900898.1 AAA family ATPase -
  ACNHKS_RS07550 (ACNHKS_07550) matP 1551031..1551483 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNHKS_RS07555 (ACNHKS_07555) ompA 1551558..1552610 (-) 1053 WP_032223517.1 porin OmpA -
  ACNHKS_RS07560 (ACNHKS_07560) sulA 1552967..1553476 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNHKS_RS07565 (ACNHKS_07565) sxy/tfoX 1553695..1554324 (+) 630 WP_416510071.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNHKS_RS07570 (ACNHKS_07570) yccS 1554287..1556449 (-) 2163 WP_000875045.1 YccS family putative transporter -
  ACNHKS_RS07575 (ACNHKS_07575) yccF 1556459..1556905 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNHKS_RS07580 (ACNHKS_07580) helD 1557028..1559082 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24189.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1100577 ACNHKS_RS07565 WP_416510071.1 1553695..1554324(+) (sxy/tfoX) [Escherichia coli strain CUWW10]
MKSLSYKRIYKSQEYLLTLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1100577 ACNHKS_RS07565 WP_416510071.1 1553695..1554324(+) (sxy/tfoX) [Escherichia coli strain CUWW10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGTTAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment